Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181675g00004 ATGGCGGAGCGTTCTTCCTCTTGTGGACTTGGTCCTCGATTAGATCTTCAGCAACTGCAGTTTGAAGCTCAGCATCGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAACTATAGGATGTTCCATATCGCATCAGAACCTCCTAACAGGCCACCGAGTGGTTCACTTTTTCTTTTTGATAGGAAGGTTTTGAGATACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAAGACGGAAAGACTGTGAAGGAAGCTCATGAGAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTACGCCCATGGAGAAGAAAATGAAAATTTTCAGAGACGTAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTTCACTATCTGGATGTTAAGGTTAACAAGACCAACATCGGTAGAAATATTGATACCACATATGAGACTACGTCAGAATCCCAGAAGGGCAGTTCTGCATCATCTGGCTTCCCTGCAAGTTATAACAGTGTGCCTTCTGGAAGTACAGATTCCATGAGTCCGACCAGCACTTTGACGTCATTATGTGAGGATGCTGATTCTGGTGATAATGGACTGTCAACAATTTCTGTATCAGATTACATTCCACATGTCCAAGGGGATAAATCTAGAGTAGGTTGTACTACTTACATTGAGGACCGAAAATCACATGTCATGCCATTAAGGGACACTATCACGGAGCAATGTGTTGGATTGTATACTGATCCTTCTATTGCACAGTGTCCTTCCATTTCATCCAGTTCAATGGGAAGCACCCTTGAACAAGAAAATGCTTTTCCTGGGAATCTGTTAGGATCTAATTCTGGCCTCATTGAGGAGGCAGGGGGTTCTCAGTCTCCCCAATCAAATTGGCAGATTCCCTTTGATGAGAATGCTGGACATTTGCCAAGATGGAGCCTAACCGAATCCTTTGGTTTGGAATTTGAATCTGATTATAGCATGGCTTTATTTGGGGGTGAAACTGATAATGCAATTCCAGAGATTTGTCCCGATTTGTTCACTTCTAATGGAGAGCTAAAAGATCAACCTGTGCAACAGAAGTTCTCAAAGCGGCATACAGATTCACAATCTCTGCATGCACCAGGATTCGATACTGACTGTGGACTTCCTCGGGAGGAAAGTGTCAGCTATTCCTTGACTGCAAAGCATGCATTACTGGATGGAGAGGAGAACCTGAAGAAGGTTGATAGCTTCTCAAGGTGGATTACTAAAGAACTTGCAGAGGTGGATGATCTGCATCTGCAATCTTCCCCTGGTATTTCATGGAGCACAGATGAGTGTGGGCATGTGATAGATGATACATCATTGAACCCATCCTTATCCCAAGATCAGCTGTTCAGCATAAATGATTTTTCACCTAAATGGGCTTATGCAGATTCCGAAATTGAGGTGTTGATTATTGGAGCCTTTTTGAAGAGTCAACCGGAGGTGGAAGCCTGTCACTGGTCCTGTATGTTTGGTGAAGTGGAGGTTCCTGCTGAAATTTTAGCCAATGGAATTATGTCCTGTCAAGCTCCACCTCATCATGTTGGACGTGTACCGTTCTACGTAACCTGTTCCAATAGGTTTGCTTGTAGTGAAGTGAGGGAATTTGAGTATAGAGAGGGACTTTCTAGGAATGTAGATGTTGCAGATTTTTTCTACAGTTCAACTGAAATGATGCTTCATTTGCGACTTGAGGAGTTAATTTCTTCGAAATCAGTGCTATCTACTAATCAATATTTTGAGGGTTATATGGAGACAAGAAACTTAATTTTTAAGCTTATTTCACTTAAAGAGGAAGAGGAATATTCACATAAGGAAGAGGCGACTGCAGGATTGAGTGTATCGCAACACAAATTGGAGGAGCGTGTGTTTCACAGGAGGGTTAAAGAAAAGCTCTACTCATGGCTTCTTCACAAGGTAACTGAAGGTGGTAAAGGGTCAAATATATTAGACAAGGATGGTCAGGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAACTCCAATTATAAATGCTGAAGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTTTACATTGGGCTGCATTCTGCGGCAGAGAGCGAACAGTTGCTGTTCTTGTCTCCATGGGTGCAGCAGCTGGAGCATTGACAGATCCAAGTCCAGAATTTCCTTCTGGCAGAACAGCTGCTGATCTTGCTTCTAGCAATGGACATAAAGGAATCTCTGGTTTTCTTGGAGAGTCATTATTAACTAGCCACCTTGCATCACTTACAATGGATGATCCAAGTGAAGATGGTAGGAATAAAACTTCAGGTGGGAAAGCAGTGCAGACGCCTTCAGAGCGAAGTGCAACACCTCTACTTTATAGTGAAGTACCGGATACTCTCTGCCTCNNNNNNNNNNGGATTCTCTTGCTGCTGTCCGTAATGCTACACAAGCTGCTGATCGCATACATCAAGTATTTAGGATGCAGTCATTTCAGAGGAAGCAGTTAG 2529 0.4255 MAERSSSCGLGPRLDLQQLQFEAQHRWLRPAEICEILRNYRMFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGRNIDTTYETTSESQKGSSASSGFPASYNSVPSGSTDSMSPTSTLTSLCEDADSGDNGLSTISVSDYIPHVQGDKSRVGCTTYIEDRKSHVMPLRDTITEQCVGLYTDPSIAQCPSISSSSMGSTLEQENAFPGNLLGSNSGLIEEAGGSQSPQSNWQIPFDENAGHLPRWSLTESFGLEFESDYSMALFGGETDNAIPEICPDLFTSNGELKDQPVQQKFSKRHTDSQSLHAPGFDTDCGLPREESVSYSLTAKHALLDGEENLKKVDSFSRWITKELAEVDDLHLQSSPGISWSTDECGHVIDDTSLNPSLSQDQLFSINDFSPKWAYADSEIEVLIIGAFLKSQPEVEACHWSCMFGEVEVPAEILANGIMSCQAPPHHVGRVPFYVTCSNRFACSEVREFEYREGLSRNVDVADFFYSSTEMMLHLRLEELISSKSVLSTNQYFEGYMETRNLIFKLISLKEEEEYSHKEEATAGLSVSQHKLEERVFHRRVKEKLYSWLLHKVTEGGKGSNILDKDGQGVLHLVAALGYDWAITPIINAEVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGAAAGALTDPSPEFPSGRTAADLASSNGHKGISGFLGESLLTSHLASLTMDDPSEDGRNKTSGGKAVQTPSERSATPLLYSEVPDTLCLXXXXILLLLSVMLHKLLIAYIKYLGCSHFRGSS 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181675g00004 842 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 809 - -
Stsc181675g00004 842 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Stsc181675g00004 842 MobiDBLite consensus disorder prediction 287 304 - -
Stsc181675g00004 842 MobiDBLite consensus disorder prediction 261 304 - -
Stsc181675g00004 842 Pfam IPT/TIG domain 464 549 IPR002909 -
Stsc181675g00004 842 ProSiteProfiles Ankyrin repeat profile. 697 729 IPR002110 GO:0005515
Stsc181675g00004 842 FunFam Calmodulin-binding transcription activator 2 457 553 - -
Stsc181675g00004 842 MobiDBLite consensus disorder prediction 261 280 - -
Stsc181675g00004 842 Gene3D - 633 759 IPR036770 -
Stsc181675g00004 842 SUPERFAMILY E set domains 464 550 IPR014756 -
Stsc181675g00004 842 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Stsc181675g00004 842 SMART CG_1_2 19 137 IPR005559 GO:0003677
Stsc181675g00004 842 ProSiteProfiles Ankyrin repeat region circular profile. 697 722 - -
Stsc181675g00004 842 MobiDBLite consensus disorder prediction 769 791 - -
Stsc181675g00004 842 Gene3D Immunoglobulins 457 552 IPR013783 -
Stsc181675g00004 842 MobiDBLite consensus disorder prediction 154 194 - -
Stsc181675g00004 842 SUPERFAMILY Ankyrin repeat 655 756 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181675g00004 Stsc-Chr181675 21984 29031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181675g00004 1 817 CAMTA Transcription Factor Family AT5G64220 49.236 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181675g00004 K21596 - gmx:100795682 1155.58