Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181671g00006 ATGGGGTTGAGAATTGACATGTTTGTTACTGAAAGATTGGAACTTTGGTTGTTTAAGAGAAGGAAGGGACTAGGGATTTTATTGCAGATTGCATTTGCTTGGTGGATTTTTCTACTGTTTCTTCACCCTGTGGCTGCTCTGAGACCCTTGAGGGAGAGAACTCGTTCTTGGGGTGATGAGTGGCTTTTTACAAGAAAAGATGAGAGTGATATTGGTCCATTTTCACAATGGAACATTACAGGAACTTACAGAGGGACTTGGAAGTTTCTTGATACGGCAAATGGTTCTTCTAGATTTCCAGATATCAGAAAAACAAGTGGTAGCTCCGTAATTGAATTAATTAGTACGCCCACAAAGATAACCGGAGTACATTATATCCAGGGGGTCATTATATACCATGATGTTTTTGACAACGAATATGATGTTGGTGGTGCTCAAATCAAAGTAGAAGGTGTATATATATGGCCTTTTCGACAGCTTCGATTGGTAGCCAACAGCGGAAAAGAGGGAGACTCAAGTCAGGATGATGACTATATTTTATCTAATCCATATCATCTGCTAGGGGTTTTCTCTTCTCAGGTGCTTCAAGATTCTTCACGAGATAAGATATGGAGAAGAAAGCATTCTCCAATGTATGACATGGAGAAACATTGTAATATGGAAATCGCTGCACAGGTTTCACGCTTGCCATCCTCAAAAAGTGAAGGCGAGCATGATCGTTTTCACTTAGAAGGGTTAATGGAGAGTCCCTCGTTGGATGATGACGGGGACTGCTTCTCAGCTTTACTGTTAAATGCAACTTCTGTTAACATTGAAGTCTATTACAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTATCTCTTTTTTGCAAGTTCTTCTATTGATTCGTCAAATGGAGCATAGCAGCACTCAGTCTGGTGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAGGCGATAATGGACGCATATCTCTGCCTTTTACACCTTACTGCAGGAATACTAGTTGAGTCGTTGTTTAATGCTTTTGCAACTGCCGCATTTTTCAAGTTTGTTGTGTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCTAGTAGACCTTTCAGTAATGGGGAAGGCTGGGAGACAATGAGGCGTGAACTTTCAGTGTTATACAGTCGTTTCTATGGAATCCTGTTGGGAGGCATTCTTTTGATGTACGAGTTCCATCATTATTTAAGACCAATTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGTGATTCACGCAAACCACTGCATCCTCACTATATCTTAGGGATAACCATTACTCGGTTAGCAATTCCCTTGTATGTTTTTGGTTGCCCTAACAATTTCATGCGCATAGAATCAGATAAGAGCTGGTGTGTTTGTTTGGCTGCATTTATTGGGCTTCAAGCTGCAGTTCTTCTTCTTCAGCATTATCTTGGATCTCGATGGTTCATTCCTCGTCAGATACTGCCTGAGAAATATAGCTACTATAGGAGGTTTGATCAAGATACAAGACATGCTTCCGACTGTGTGATTTGCATGACCTCCATTGATCTTACTCAACGGTCTAGTGACTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCGACTTGCCGGCGCTCTCTTCCACCGGCATAG 1731 0.4107 MGLRIDMFVTERLELWLFKRRKGLGILLQIAFAWWIFLLFLHPVAALRPLRERTRSWGDEWLFTRKDESDIGPFSQWNITGTYRGTWKFLDTANGSSRFPDIRKTSGSSVIELISTPTKITGVHYIQGVIIYHDVFDNEYDVGGAQIKVEGVYIWPFRQLRLVANSGKEGDSSQDDDYILSNPYHLLGVFSSQVLQDSSRDKIWRRKHSPMYDMEKHCNMEIAAQVSRLPSSKSEGEHDRFHLEGLMESPSLDDDGDCFSALLLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPFSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHHYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITITRLAIPLYVFGCPNNFMRIESDKSWCVCLAAFIGLQAAVLLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHASDCVICMTSIDLTQRSSDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181671g00006 576 PANTHER RING ZINC FINGER PROTEIN 150 575 - -
Stsc181671g00006 576 Pfam Ring finger domain 525 570 IPR001841 -
Stsc181671g00006 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Stsc181671g00006 576 SMART ring_2 526 569 IPR001841 -
Stsc181671g00006 576 SUPERFAMILY RING/U-box 509 574 - -
Stsc181671g00006 576 CDD RING-H2_TUL1-like 520 575 - -
Stsc181671g00006 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 576 IPR013083 -
Stsc181671g00006 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Stsc181671g00006 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181671g00006 Stsc-Chr181671 30977 37524 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181671g00006 526 573 C3H Transcription Factor Family AT4G12190 39.583 7.22e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181671g00006 K23788 - gmx:100780140 1031.55