Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181671g00004 ATGGTTCCCACTGAAAGATTCCAGCTTTGGCTAAGGATTGCATTTGGGTGGTGGGTTTTTCTACTGTTTCTTCCCTCTGTGGCTGGTCTCAGACCCTTGAGGGAGAGAACTCGCTCTTGGGGTGATGAGTGGCTTACAAGAAAAGATGAGAGTGATAGTGGTCCATTTTCACAATGGAACATAACTGGAACTTATAGAGGGAATTGGAAGTTTTCAGATGCCGCAAATGGCTCTTCCAGATTTCCAGACATCAGAAAGAGAACTGGTAATTCTGTAATTGAATTATTTAGTACACCCACGAAGATAACTGGAGTACATTACGTTCAGGGAGTTATTATATTCCATGATGTGTTTGACAATGAATATAATGTTGGTGGTGCCCAGATCAGAGTGGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGAAAGAATTGAATCAGGATGGAGACTATATTTTATCCAATCCATACCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCCCGAGATAAGATGTGGAGAAAGAAACATTCACCAATGCATGACATGGAGAAACATTGTAATATTGAAATTGCCGCGCAGATTTCACGCTTACCATCAACCAAAAATGAAGGAGAACATGATCGTTTTCACCTCGAAGGTTTGATGGAGAGTCCCTCCACGGACGACGATGGAGACTGTTTCTCACCATTACTGTTAAATGCAACATCGGTCAACATTGAGGTGTACTATAACAAGGCAGTGAACTATACGTTGATGGTTACTTTTATTTCTTTCTTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACGCAATCTGGGGCTGCTAAGGTTTCAATATTGATGATTGGCCAACAAGCGATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAATTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTCGTCTTCTCAATATTTGAGATGAGATATCTCCTCACCATCTGGAAGGCAAATAGGCCTTTGAGTAGCGGAGAAGGTTGGGAGGCAATGAGGCGCGAACTTTCGGTCTTATATAGCCGTTTCTATGGAATCCTATTGGGAGGCATTCTCCTCATGTACGAGTTCCATCACTATTTAAGACCCATTCTTCTTCTTATGTACTCCTTTTGGATACCTCAGATAATCACCAATGTTATTCGTGACTCGCGCAAGCCGTTGCATCCTCATTATATCCTCGGGATATCTATTACTCGCTTAGCAGTCCCGCTATATGTTTTTGGTTGCCCAAACAACTTCATGCGCATACAGCCAGACAAGAGCTGGTGTGTTTCATTGACTCTGTTTATTGGGCTTCAAGCTTCAGTTCTCCTCCTTCAGCATTATCTCGGGTCACGTTGGTTCATTCCTCGCCAGATACTACCTGAGAAGTACAGCTATTATAGAAGGTTTAATCAAGATCCAAGACATGCTACAGATTGTGTTATTTGTATGACATCCATCGATCTTAATCAGCGGTCCAACGACTGCATGGTGACACCTTGTGATCATTTCTTTCACTCTGGCTGTCTGCAAAGATGGATGGATGTAAAGATGGAGTGCCCAACTTGCCGGCGCTCTCTACCGCCGGCATAG 1677 0.4252 MVPTERFQLWLRIAFGWWVFLLFLPSVAGLRPLRERTRSWGDEWLTRKDESDSGPFSQWNITGTYRGNWKFSDAANGSSRFPDIRKRTGNSVIELFSTPTKITGVHYVQGVIIFHDVFDNEYNVGGAQIRVEGVYIWPFRQLRMVANSGKEKELNQDGDYILSNPYHLLGVFSSQVLQDSSRDKMWRKKHSPMHDMEKHCNIEIAAQISRLPSTKNEGEHDRFHLEGLMESPSTDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILIESLFNAFATAAFFKFVVFSIFEMRYLLTIWKANRPLSSGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHHYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGISITRLAVPLYVFGCPNNFMRIQPDKSWCVSLTLFIGLQASVLLLQHYLGSRWFIPRQILPEKYSYYRRFNQDPRHATDCVICMTSIDLNQRSNDCMVTPCDHFFHSGCLQRWMDVKMECPTCRRSLPPA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181671g00004 558 Pfam Ring finger domain 507 552 IPR001841 -
Stsc181671g00004 558 FunFam E3 ubiquitin-protein ligase, putative 494 558 - -
Stsc181671g00004 558 CDD RING-H2_TUL1-like 503 557 - -
Stsc181671g00004 558 SUPERFAMILY RING/U-box 494 556 - -
Stsc181671g00004 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 558 IPR013083 -
Stsc181671g00004 558 SMART ringv_2 507 552 IPR011016 GO:0008270
Stsc181671g00004 558 ProSiteProfiles Zinc finger RING-type profile. 508 552 IPR001841 -
Stsc181671g00004 558 PANTHER RING ZINC FINGER PROTEIN 94 557 - -
Stsc181671g00004 558 SMART ring_2 508 551 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181671g00004 Stsc-Chr181671 20253 26009 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181671g00004 508 555 C3H Transcription Factor Family AT4G12190 39.583 3.92e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181671g00004 K23788 - gmx:100785460 992.645