Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181671g00002 ATGAAGAGGGAGGCTATGCCGGATGATGAAGATAACAATAAGAATAAGAATAAGAAGAAGAAAGGAGTGGTGGTGGTGACATGTGTTAGCGGGAATAATAAGAAAGGTTCCGGTGGTGGCGGCGGCATGCGGTGTTGTCAGGCTGAGAATTGCAAGGCGGATCTTGAGGAGGCAAGGCAGTACCATAGGAGGCACAAGGTTTGTGAGTTTCATGCCAAGGCTCAGGTCGTTCTTGTTTCCGGCACTAGACAACGCTTCTGTCAGCAATGTAGCAGGTTCCATGAGTTAGCTGAATTTGATGAGACAAAAAGAAGCTGCCGGAGGCGTTTGGCCGGGCACAACGAACGGCGAAGAAAGAACTCTGAATCTCAAGCAGAAGGCTCATCAAGCAGCCGCAAAGGGATAAGTCCTCAGTTGAAGAAGGACACTGGCTTTGGGGATGATAGGAGCAGCAGAATTCAGATTTCAATCCAAGAGAATAATAATGGAGCTTACAAACATTTCCAGATAAGATGA 516 0.4729 MKREAMPDDEDNNKNKNKKKKGVVVVTCVSGNNKKGSGGGGGMRCCQAENCKADLEEARQYHRRHKVCEFHAKAQVVLVSGTRQRFCQQCSRFHELAEFDETKRSCRRRLAGHNERRRKNSESQAEGSSSSRKGISPQLKKDTGFGDDRSSRIQISIQENNNGAYKHFQIR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181671g00002 171 Gene3D - 36 107 IPR036893 GO:0003677|GO:0005634
Stsc181671g00002 171 ProSiteProfiles Zinc finger SBP-type profile. 43 120 IPR004333 GO:0003677
Stsc181671g00002 171 Pfam SBP domain 46 119 IPR004333 GO:0003677
Stsc181671g00002 171 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 131 IPR044817 GO:0003677
Stsc181671g00002 171 SUPERFAMILY SBT domain 44 123 IPR036893 GO:0003677|GO:0005634
Stsc181671g00002 171 MobiDBLite consensus disorder prediction 110 158 - -
Stsc181671g00002 171 FunFam Squamosa promoter-binding-like protein 14 37 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181671g00002 Stsc-Chr181671 12625 14130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181671g00002 40 139 SBP-box Gene Family AT1G53160 66.000 9.76e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc181671g00002 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181671g00002 - - csav:115700826 195.667