Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181671g00001 ATGCGTCTCTGTTTTGGGGTGCTGGGTTCGTCTGAATTTCGCATCTTGTGTTCTTCTTCCTTTGATTTTGGACCCCTTCTGATGTGGGTTTCCTCTTCCCACTCTAGAAGGGGCTTGCTCTATGCTCTCTCTTTTCCACCTTTCACTGGTGGGATTGAACTTCGAGATCTCATTCATGGCATGAAGGAGGTGTATGACAAGACTCAAGCTCAAGTTTTTTCTAACTACCCAGTTGGTGGATATGTGTATGTAGAACTTTTGGAAATTCGTAAGGATGTCCAGTGCCCAATATGCCTTGGCATTATTAAGAAAACCAGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAAT 371 0.4394 MRLCFGVLGSSEFRILCSSSFDFGPLLMWVSSSHSRRGLLYALSFPPFTGGIELRDLIHGMKEVYDKTQAQVFSNYPVGGYVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKS 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181671g00001 123 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Stsc181671g00001 123 PANTHER OS11G0578200 PROTEIN 78 123 IPR044592 -
Stsc181671g00001 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 123 IPR013083 -
Stsc181671g00001 123 Pfam Zinc finger, C3HC4 type (RING finger) 94 123 - -
Stsc181671g00001 123 SUPERFAMILY RING/U-box 84 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181671g00001 Stsc-Chr181671 13 2325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181671g00001 88 120 C3H Transcription Factor Family AT3G23060 48.485 1.42e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181671g00001 K10695 - gmx:100776547 93.9745