LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181669g00003	ATGTCTTCTACACTTGAGGAATCTCTAAGATCTCTATCGTTGGATTACCTCAACCTCCTAATCAACGGTCAGGCTTTCAGTGACGTCACCTTCAGCGTGGAGGGCCGTCTAGTACACGCGCACCGCTGCATCCTGGCGGCAAGAAGTCTATTCTTCAGGAAATTTTTCTGCGGGCCCGACCCTCCGTCGCCCTCTGGTCTGGACCATCCAGGCCAGAGGATAAACTCGGGGTCGGGCTGCAGAACCCCTACGGGGGTTATACCTGTGAACTCCGTGGGGTACGAGGTGTTCCTGCTGATGCTGCAGTTCTTGTATAGCGGGCAGGTATCCATCGTCCCCCAGAAGCACGAGCCACGGCCCAATTGCGGCGAGAGAGGTTGCTGGCACACGCATTGCTCCTCCGCCGTCGATCTGGCCCTTGACACACTCGCCGCCGCTAGATACTTCGGTGTTGAACAGCTTGCATTGCTAACTCAGAAACAACTAGCGAGCATGGTGGAGAAAGCATCCATTGAAGATGTGATGAAAGTGTTGGTAGCTTCACGAAAGCAAGACATGCACCAGCTATGGACCACATGCTCCCACCTTGTAGCCAAGTCCGGCCTCCCACCCGAGGTTCTCGCCAAGCACCTCCCCATAGACATCGTCGCCAAAATCGAAGACCTCCGCCTCAAATCCTCCCTCGCCCGCCGTACCGCCGCCTTCCTCCCCCACCACCACCACCCGGACCTCTCGGCCGCAGCGGACCTTGAGGATCAAAAGATCCGCCGGATGAGACGAGCTCTCGACTCATCCGACGTGGAGCTTGTGAAGCTAATGGTAATGGGAGAAGGGCTCAATCTCGACGACGCGCTGGCTCTGCATTACGCCGTCGAGAATTGTAGCCGAGAAGTGGTGAAAGCCCTGCTGGAACTCGGGGCAGCTGACGTCAACTACCCCGCGGGTCCAGCAGGGAAAACACCACTACATATCGCGGCGGAAATGGTTTCGCCCGATATGGTGGCGGTCCTGCTGGACCACCACGCTGACCCAAACGTGAGAACCGTTGACAATGTGACACCATTGGACACACTAAGAACCCTAACCTCTGATTTTCTCTTTAAAGGCGCAGTCCCTGGCCTAACTCACATTGAACCAAACAAGCTAAGGCTGTGTTTGGAGCTTGTTCAATCCGCTGCACTTGTTTTGTCTCGTGAAGAAGGTAACGCCAATAACAACAACAATAACAATGTTGCTTCTTCTACAACGCAACATCATCATCATAATCATATTTATCCTCCTTCACTGAATGAAGATCATCATAGCAGTTCAAGCAGTGGCGGCAACAACAATAACAATAGCAATAGCAACATTAACTTGGATTCCAGGTTGGTGTATCTTAACCTTGGTGCCACCCTCGGTGCTGGTGGTGGCTCCGCTCAATTGAGTGATGATGATAACCGCCATGGGGAAGCAGCAATGTACCATCACCACCACCACCATCACCATCCTCATCATAACTTCTAG	1506	0.5339	MSSTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSPSGLDHPGQRINSGSGCRTPTGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEDLRLKSSLARRTAAFLPHHHHPDLSAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDDALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDNVTPLDTLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANNNNNNNVASSTTQHHHHNHIYPPSLNEDHHSSSSSGGNNNNNSNSNINLDSRLVYLNLGATLGAGGGSAQLSDDDNRHGEAAMYHHHHHHHHPHHNF	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181669g00003	501	ProSiteProfiles	BTB domain profile.	27	113	IPR000210	GO:0005515
	Stsc181669g00003	501	FunFam	regulatory protein NPR5 isoform X2	248	365	-	-
	Stsc181669g00003	501	Gene3D	-	248	365	IPR036770	-
	Stsc181669g00003	501	FunFam	regulatory protein NPR5 isoform X1	6	199	-	-
	Stsc181669g00003	501	MobiDBLite	consensus disorder prediction	400	449	-	-
	Stsc181669g00003	501	CDD	BTB_POZ_NPR_plant	10	166	-	-
	Stsc181669g00003	501	Gene3D	Potassium Channel Kv1.1; Chain A	2	199	IPR011333	-
	Stsc181669g00003	501	SUPERFAMILY	Ankyrin repeat	276	359	IPR036770	-
	Stsc181669g00003	501	ProSiteProfiles	Ankyrin repeat region circular profile.	317	347	-	-
	Stsc181669g00003	501	PANTHER	BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2	4	496	IPR044284	GO:0099402
	Stsc181669g00003	501	SMART	ANK_2a	282	312	IPR002110	GO:0005515
	Stsc181669g00003	501	SMART	ANK_2a	317	346	IPR002110	GO:0005515
	Stsc181669g00003	501	Pfam	BTB/POZ domain	18	116	IPR000210	GO:0005515
	Stsc181669g00003	501	SUPERFAMILY	POZ domain	10	164	IPR011333	-
	Stsc181669g00003	501	Pfam	Ankyrin repeats (3 copies)	265	347	IPR002110	GO:0005515
	Stsc181669g00003	501	SMART	BTB_4	27	166	IPR000210	GO:0005515
	Stsc181669g00003	501	Pfam	Domain of unknown function (DUF3420)	201	259	IPR024228	-
	Stsc181669g00003	501	ProSiteProfiles	Ankyrin repeat profile.	317	349	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181669g00003	Stsc-Chr181669	41364	44307	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Stsc181669g00003		BTB	3.2e-14	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181669g00003	K14508		-	qsu:112012060	728.013