Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181668g00003 ATGTACCTGCGCCTAGGTTTTGTGCCCACCATTGTTGTTTCTTCATGCCAAGCTGCTGAATTGTTCCTCAAGACACACGACCATGTCTTTGCTAGCAGGCCACCTCAAGAAGCTGCAAAGTACATCTCTTGGGAGCAGAGAAATTTGATTTTTGCTGAATATGGCCCTTACTGGCGTAACATGCGCAAGATGTGCACATTGGAATTACTGAGCCAAACCAAAATCAACTCCTTCAAAACCATGAGGCAAGAAGAGATTGACCTATTCATCAAGCTTGTGAGAGAAGCCACCAGTGATGGAGTTGCTGTTGATCTTAGTGCCAAGGTTGCAACACTAAGTGCAGACATGAGTTGTAGAATGATTTTGGGGAAGAAGTACATGGACCAGGACTTGGATGAGAAAGGGTTCAAAGCTGTTATGCAAGAGACACTGCAATTGGCAGCAATTCCAAACCTAGGTGACTATATTCCTTACATCGGTGCACTTGATCTTCAAGGGTTAATTAAGCGCATGAAGGTAGTGCGAAAAATCTTTGATGAGTTCTTTGACAAAGTCATACATGAGCACCTGCTATCAGAGAACAAAAAAGACAAAGATAAGGACTTTGTGGATGTCATGCTGAGCTTTCTTGGCACAGAAGAATCTGAATATCGTATTGAACAGCCTAATATAAAAGCGATATTGCTGGATATGCTGGTTGGTTCAATGGACACTTCAGCTACAGCAATAGAGTGGGCAATTTCAGAGCTAATAAAGCATCCAAGGGTGATGAGGAAACTTCAAATGGAGTTGGAATCTGTGGTAGGCATGAATAGGATTGTGGAGGAGTCAGACTTGGACAAGTTGAAGTATTTAGACATGGTCATCAAGGAAAGCATGAGGATTCATCCAGTGGGACCATTACTAATACCACACCAATCTATGGAAGATTGCATGGTTGGAGATTTCTTCATACCTAAAAATTCCAGGGTGATAATAAATGTATGGACAATTATGAGAGACCCAAGTGCTTGGACTGAGCCAGAGGAATTCTGGCCAGAGAGATTCGAGGGAAGAGACATCGATATTAGAGGGAAGGACTTCCGACTGATACCATTTGGGTCTGGCAGAAGAGCATGTCCTGGACTGCAGTTAGGCCTGACTGTGGTTCGGTTAGTGGTGGCGCAGCTTGCGCATTGCTTTGATTGGAAGTTACCAAAGGGGATGCTGCCATGTGAGTTGGACATGAATGAGGAGTTTGGCCTCACAGTGCCTAGGGCCAATCATCTACTTGCCATTCCTACTTATCGCCTTAACAATGAAAGTGGTTAG 1311 0.4394 MYLRLGFVPTIVVSSCQAAELFLKTHDHVFASRPPQEAAKYISWEQRNLIFAEYGPYWRNMRKMCTLELLSQTKINSFKTMRQEEIDLFIKLVREATSDGVAVDLSAKVATLSADMSCRMILGKKYMDQDLDEKGFKAVMQETLQLAAIPNLGDYIPYIGALDLQGLIKRMKVVRKIFDEFFDKVIHEHLLSENKKDKDKDFVDVMLSFLGTEESEYRIEQPNIKAILLDMLVGSMDTSATAIEWAISELIKHPRVMRKLQMELESVVGMNRIVEESDLDKLKYLDMVIKESMRIHPVGPLLIPHQSMEDCMVGDFFIPKNSRVIINVWTIMRDPSAWTEPEEFWPERFEGRDIDIRGKDFRLIPFGSGRRACPGLQLGLTVVRLVVAQLAHCFDWKLPKGMLPCELDMNEEFGLTVPRANHLLAIPTYRLNNESG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181668g00003 436 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 366 375 IPR017972 GO:0005506|GO:0016705
Stsc181668g00003 436 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Stsc181668g00003 436 PRINTS E-class P450 group I signature 243 269 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS E-class P450 group I signature 223 240 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS E-class P450 group I signature 373 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS E-class P450 group I signature 286 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS E-class P450 group I signature 363 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS E-class P450 group I signature 327 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS E-class P450 group I signature 112 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PANTHER CYTOCHROME P450 93A3-LIKE 1 432 - -
Stsc181668g00003 436 Pfam Cytochrome P450 2 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 FunFam Cytochrome P450 83B1 1 426 - -
Stsc181668g00003 436 PRINTS P450 superfamily signature 287 298 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS P450 superfamily signature 234 251 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 PRINTS P450 superfamily signature 364 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 SUPERFAMILY Cytochrome P450 2 430 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 Gene3D Cytochrome P450 1 429 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181668g00003 436 CDD CYP71-like 1 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181668g00003 Stsc-Chr181668 19387 21649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181668g00003 1 431 Cytochrome P450 AT5G07990 41.136 1.52e-118 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181668g00003 K20562 - gmx:100809526 723.005