Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181666g00004 ATGGCTGACATAAGAGCCTCAAGAAGAGACGGAAGAGGATCAATGGTGACTCGAAGCATGTCAATCGATGACTTGGAGAAGCTTCCATGCTATGATTACATCGCCAAGGACATGACAAGTAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCAACACTGGCGACAAGTGCCGGTTGTTACCGATGTGCAAGCACAGTTTTCATGCTCAGTGTGTGGATACATGGCTTCTCAAGACACCCTTTTGCCCAATTTGCAGATCAAGTGCTGCTTCTATCAGTGGAAGCCAATTTATTGTTGTAAGAGAAAGCCAAGAAAGTGGTTCTTCTACAAATGTGGGAATGGAAATGAGAGAAAATCCAGCATTAGGATCAACAAGGCAACAAATAGATACAACTGAAAATCATATGGTATCTGCTTCTACTTTGTCTCTGGCTAATGCTGTATAA 450 0.4356 MADIRASRRDGRGSMVTRSMSIDDLEKLPCYDYIAKDMTSSPVDCAVCLESLNTGDKCRLLPMCKHSFHAQCVDTWLLKTPFCPICRSSAASISGSQFIVVRESQESGSSTNVGMEMRENPALGSTRQQIDTTENHMVSASTLSLANAV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181666g00004 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 94 IPR013083 -
Stsc181666g00004 149 Pfam Ring finger domain 44 87 IPR001841 -
Stsc181666g00004 149 FunFam RING-H2 finger protein ATL2K 20 93 - -
Stsc181666g00004 149 SUPERFAMILY RING/U-box 35 93 - -
Stsc181666g00004 149 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 121 - -
Stsc181666g00004 149 ProSiteProfiles Zinc finger RING-type profile. 45 87 IPR001841 -
Stsc181666g00004 149 SMART ring_2 45 86 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181666g00004 Stsc-Chr181666 32237 35225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181666g00004 8 89 C3H Transcription Factor Family AT1G74410 41.463 1.54e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181666g00004 - K15692 lang:109353575 192.971