Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181662g00001 ATGGCTTCTTCTTCTTCAATGAGGATCTCCAGGCTCCTTTCTCGCTCTTTCTCTTCCTCCTCCTCTCTTCTTTCTCGGGGTGGGAAGGGTTACCTTGGTACAGGGATCAGCAAATATAGCACTGCAACTGCCATTGAAGAAGAACCAATCAAACCAGCAGTGCAAGTAGAACACACCCAACTCCTAATTGGTGGGAAATTCGTTGATGCTCTTTCTGGTAAAACTTTTCCAACCTTGGACCCAAGAACAGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATAGAGCAGTTGCAGCTGCAAGAAAGGCATTTGATCAAGGACCCTGGCCTAAGATGACAGCCTATGAGAGGCAAAGGGTATTGTTGCGAGCCGCTGATCTGCTTGAGAAGCACAATGATGAGCTTGCAGCACTTGAAACCTGGGATAATGGGAAGCCATATGAACAAGCTGCTCAGATTGAAGTCCCAATGCTTGTTCGCCTTTTCCGGTACTATGCTGGTTGGGCAGATAAGATCCATGGTATGACAGTTCCGGCTGATGGGCAATATCATGTGCAAACATTGCACGAACCGATCGNNNNNNNNNNTCAGATCATTCCCTGGAATTTTCCTCTTGTCATGTTTGCTTGGAAGGTTGGACCGGCATTGGCCTGTGGCAATACTATTGTCCTCAAAACCGCTGAGCAGACACCATTGTCAGCTTTGTATGCAGCAAAACTATTTCATGAGGCTGGACTTCCTGAAGGTGTTTTGAACGTGGTATCGGGCTTTGGTCCCACTGCTGGTGCAGCTCTTGCAAGTCACATGGATGTGGATAAGCTTGCCTTTACTGGTTCTACTGATACCGGGAAAGTTGTCCTTGAGCTAGCAGCTAGAAGCAATCTTAAGCCTGTAACTCTGGAGCTTGGTGGAAAATCTCCTTTTATTGTATGTGAAGATGCCGATGTAGATCAGGCTGTTGAGCTTGCACACTTTGCCTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGTTCCAGGACATATGTACATGAACGTGTATATGATGAGTTTGTTGAGAAAGCAAAGGCTCGTGCCTTGAAACGTATTGTTGGTGATCCATTCAAGAGTGGAATAGAGCAAGGTCCTCAGATCGATTCAGAACAATTCGAGAAGATACTGAAGTATATCAGATCCGGTGTTCAAAGTGGAGCTACACTCGAAACCGGGGGAGATAGACTTGGCAGCAAGGGCTTCTATGTTCAGCCTACCGTCTTCTCCAATGTTCAGGATGGAATGCTGATTGCAAAGGAAGAAATTTTTGGCCCGGTCCAATCCATACTAAAATTCAAGGACCTCGAGGATGTTATTCAAAGGTCGAACAACACGCGCTATGGACTGGCAGCAGGGGTGTTCACGAAGAACATAGATACGGCGAACACCTTGACGAGAGCATTGAGAGTTGGAACAGTTTGGGTGAACTGCTTTGACACATTTGATGCAGCAATCCCATTTGGTGGTTACAAGATGAGTGGACAAGGAAGGGAAAAGGGTGAGTATAGTCTCAAGAATTACTTGCAAGTCAAGGCAGTTGTTACCCCTTTGAAGAACCCTGCATGGCTTTAG 1620 0.4605 MASSSSMRISRLLSRSFSSSSSLLSRGGKGYLGTGISKYSTATAIEEEPIKPAVQVEHTQLLIGGKFVDALSGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDQGPWPKMTAYERQRVLLRAADLLEKHNDELAALETWDNGKPYEQAAQIEVPMLVRLFRYYAGWADKIHGMTVPADGQYHVQTLHEPIXXXXQIIPWNFPLVMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLFHEAGLPEGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKAKARALKRIVGDPFKSGIEQGPQIDSEQFEKILKYIRSGVQSGATLETGGDRLGSKGFYVQPTVFSNVQDGMLIAKEEIFGPVQSILKFKDLEDVIQRSNNTRYGLAAGVFTKNIDTANTLTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181662g00001 539 FunFam Aldehyde dehydrogenase, putative 501 527 - -
Stsc181662g00001 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
Stsc181662g00001 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 324 - -
Stsc181662g00001 539 Pfam Aldehyde dehydrogenase family 69 529 IPR015590 GO:0016491
Stsc181662g00001 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 73 529 IPR016162 GO:0016491
Stsc181662g00001 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Stsc181662g00001 539 CDD ALDH_F2BC 56 531 - -
Stsc181662g00001 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 43 529 - -
Stsc181662g00001 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Stsc181662g00001 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Stsc181662g00001 539 SUPERFAMILY ALDH-like 54 533 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181662g00001 Stsc-Chr181662 2644 6373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181662g00001 5 539 Aldehyde Dehydrogenase Gene Family AT3G48000 76.536 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181662g00001 K00128 - gmx:100777399 951.814