Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181657g00003 ATGACTGACGTGGCGAGTTCGGTGGTCCATGAGGTTTTGGGACGAAGGGTTCTTAATGTCGATCAGCCAATCGTTGATTACATCGTCAACGTCCTCGCCGACGACGACTTCGATTTCGGACTCGACGGCGAAGGCGTCTTCGAAGCCCTGGGAGAACTTCTCGTCGCCGCTTGCTGCGTCGACGAATTCTCCGAGTGCCGCACGGTTTGTAGCAAGCTAACTGATAAGTTTGGGAAGCATGGTATGGTGAAGGCGAAGCCAACGGTGCGAAGTCTTGCGGCGCCGTTTAGGATGAATGAGGGAATGGATGAAGGGCAAACCAAGAAGAAGAAGCCTGAGCCTGTTGATGGCCCTTTGCTCTCTGAGCGCGACCGCATGAAGCTTGACAGGAGAAAGAGGAAGGAGGAACGCCAGAGAGAGGCGCAATACCAAATGCACTTAGCAGAGATGGAAGCAGCGCGGGCAGGGATGCCGGTTGTATGTGTCAGGCATGAAGGTATTGGTGGAGCAGCTGTGAAGGACATTCATATGGAGGGCTTCAATATCTCTGTTGGTGGTCGTGATCTCATTGTTGACGGTTCAGTTACACTTTCCTTTGGAAGGCATTATGGTCTTGTAGGAAGGAATGGTACAGGCAAGACTACTTTCCTCAGGCACATGGCTATGCATGCTATTGATGGTATTCCAATGAACTGTCAGATATTGCACGTGGAACAAGAGGTGGTTGGTGATAATACAACTGCCTTGCAGTGTGTTCTCAATGCTGACCTTGAACGAACTCAACTTTTGGAGGAAGAAGCTCAATTGCTTGCCAGACAGAGGGAACTTGAGGACAAAAATGGACAAAGCAATGGGGAGGTCCATAAAGATGGTATTTCGCAAAGACTTGAGGAAATATACAAGAGGCTTGAGTTAATTGATGCTTATGCTGCAGAGTCACGTGCAGCATCAATACTTGCGGGTCTTAGTTTCTCCCCTGAGATGCAGAAGAAGGCAACAAAAACCTTTTCTGGAGGATGGCGGATGCGCATAGCTCTAGCTCGTGCACTGTTTATAGAGCCTGATATATTACTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCATACTTGGTTAAATGGCCAAAAACATTTATCGTCGTTTCTCATGCCAGGGAGTTTTTAAATACGGTGGTTACTGATATAATTCATCTACAAGCTCAAAAGCTGACTACATATAGAGGGAATTATGATACTTTTGAGAAGACACGAGAAGAACAAATTAAAAACCAGCAAAAAGCACTAGAGGCAAATGAACGTGCAAGATCTCATATGCAGACCTTCATTGACAAGTTCCGCTATAATGCCAAGAGAGCATCCCTTGTTCAATCCAGAATCAAGGCTTTGGAACGAATGGGCCATGTGGATGAAATTATTAACGACCCTGATTACAAATTTGAGTTCCCAACCCCAGATGATAGACCAGGCCCACCCATCATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGACCTATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATTGGAAAGTCGACTATACTCAAATTAATTGCTGGGGAACTAAATCCTATTTCTGGGACAGTATTCCGATCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCATCATGTTGATGGACTAGACTTATCTTCAAATCCTCTTCTGTATATGATGCGCTGTTATCCAGGCGTTCCAGAGCAGAAGCTTCGAGCCCATCTAGGATCTTTTGGTGTAACGGGAAATCTTGCACTTCAACCAATGTATACTTTGTCAGGGGGTCAGAAAAGCAGGGTTGCATTTGCTAAGATAACTTTCAAGAAACCACATATAATATTGCTTGATGAGCCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGACTTGTGATGTTCCAAGGAGGCATTCTCATGGTGAGTCATGATGAGCACCTCATATCTGGAAGCGTGGAGGAGCTATGGGTTGTATCCGAAGGAAGAGTGTCACCATTCCACGGCAACTTCCAAGATTATAAGAAGATACTCCAATCTTAG 2130 0.4531 MTDVASSVVHEVLGRRVLNVDQPIVDYIVNVLADDDFDFGLDGEGVFEALGELLVAACCVDEFSECRTVCSKLTDKFGKHGMVKAKPTVRSLAAPFRMNEGMDEGQTKKKKPEPVDGPLLSERDRMKLDRRKRKEERQREAQYQMHLAEMEAARAGMPVVCVRHEGIGGAAVKDIHMEGFNISVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPMNCQILHVEQEVVGDNTTALQCVLNADLERTQLLEEEAQLLARQRELEDKNGQSNGEVHKDGISQRLEEIYKRLELIDAYAAESRAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQAQKLTTYRGNYDTFEKTREEQIKNQQKALEANERARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELNPISGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSEGRVSPFHGNFQDYKKILQS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181657g00003 709 Gene3D - 462 709 IPR027417 -
Stsc181657g00003 709 Pfam ABC transporter 194 364 IPR003439 GO:0005524
Stsc181657g00003 709 FunFam ATP-binding cassette sub-family F member 3 462 709 - -
Stsc181657g00003 709 MobiDBLite consensus disorder prediction 98 120 - -
Stsc181657g00003 709 Coils Coil 259 279 - -
Stsc181657g00003 709 CDD ABCF_EF-3 175 409 - -
Stsc181657g00003 709 Pfam ABC transporter 517 647 IPR003439 GO:0005524
Stsc181657g00003 709 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 148 708 - -
Stsc181657g00003 709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 432 IPR003439 GO:0005524
Stsc181657g00003 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 434 IPR027417 -
Stsc181657g00003 709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 500 709 IPR003439 GO:0005524
Stsc181657g00003 709 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524|GO:0016887
Stsc181657g00003 709 Pfam ABC transporter 403 483 IPR032781 -
Stsc181657g00003 709 MobiDBLite consensus disorder prediction 102 120 - -
Stsc181657g00003 709 CDD ABCF_EF-3 500 692 - -
Stsc181657g00003 709 FunFam ABC transporter F family member 3 127 445 - -
Stsc181657g00003 709 ProSitePatterns ABC transporters family signature. 336 350 IPR017871 GO:0005524|GO:0016887
Stsc181657g00003 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 701 IPR027417 -
Stsc181657g00003 709 SMART AAA_5 525 692 IPR003593 GO:0016887
Stsc181657g00003 709 SMART AAA_5 199 409 IPR003593 GO:0016887
Stsc181657g00003 709 Gene3D - 178 458 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181657g00003 Stsc-Chr181657 28830 43315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181657g00003 456 661 Calmodulin-binding Proteins AT2G36910 25.926 1.47e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181657g00003 K06158 - gmx:100790412 1239.56