Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181656g00003 ATGACCAGGCTTTGCAACCTTCACCTTCACCCTTCCCACCAACTCCTCTCTCTCAAGAAATCCCTAAGACACGTCGACATTCCCCCTAGGAAGCTCCTCATTCGCCGCTCTGCCGCCAATCACGACGCATCTGCCGACATCTTCTCCGATGACACGCTCCTCCTCAAGTACCTCCCTCACAACACCCTCGCTGATTCCTCCGACGATGACTCCGACGACCCGTACTCCTCCGACCATTTCCGCATGTACGACTTCAAGGTTCGTCGTTGCACGCGCAGCCGGAGCCACGACTGGACCGACTGCCCCTTCGCCCACCCGGGCGAAAAGGCACGCCGTCGTGATCCCCGGCGATTCCACTACACCGGAACAATGTGTCCGGAGTATCGCCGCGACGGCACGTGCCGACGCGGCGATGCGTGCGAATTCTCGCACGGAGTTTTCGAGTGCTGGCTCCACCCGGCTCGGTACAGAACGGAGGCATGCAAGGACGGGAAGAGCTGCAAGAGGAAGGTGTGTTTCTTCGCCCACACGCCTCGCCAATTGAGGGTTCTTCCCTCCAATCTGATGAACGCACAGAACGACACCGTTTCGTGCAAGAACCACATCAAAAAGAGTAATAATAACCACTTCTGTTTGTTGTGCCACTCTTGCGCTTGTTCTCCAACTTCTAACTTGTTTGGCATTTCACCTTCTTCTCCTCCACCTTTTCACCATCACGGTGGACATGGTGGTGTTAATGTGAGCTACAAGGAGGTGCCAACTGAGATTCTGTCTGCATTTGAGGGTTTGAATTTCGGCGGTGAAACTGCTGGTTCTAATCATTTGTCACCTTCTACGTTTAAGGGGCAAAATAGTAATAACAATAATAATACGATGCCTTGGATTCCTGACATTTGCTGCGAGGATCATCAGAATATTCAGAATAATAATAAGCAGCACTTCATTCTTTCACCCACGGTCTCTTCTTCTCATTCGATGAGCTTCTCCAATAATAACGGCGGCAAGTTGCTGTTCAGCGATGGGAGGAATTTCAAGGGTGTTGATGACGTCAGCGTGTCGTCATGGGCAACCCCGGATCTTGGGTGGGTCAACGACTTGCTGACGTAA 1107 0.5239 MTRLCNLHLHPSHQLLSLKKSLRHVDIPPRKLLIRRSAANHDASADIFSDDTLLLKYLPHNTLADSSDDDSDDPYSSDHFRMYDFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYTGTMCPEYRRDGTCRRGDACEFSHGVFECWLHPARYRTEACKDGKSCKRKVCFFAHTPRQLRVLPSNLMNAQNDTVSCKNHIKKSNNNHFCLLCHSCACSPTSNLFGISPSSPPPFHHHGGHGGVNVSYKEVPTEILSAFEGLNFGGETAGSNHLSPSTFKGQNSNNNNNTMPWIPDICCEDHQNIQNNNKQHFILSPTVSSSHSMSFSNNNGGKLLFSDGRNFKGVDDVSVSSWATPDLGWVNDLLT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181656g00003 368 Gene3D - 116 187 - -
Stsc181656g00003 368 SUPERFAMILY CCCH zinc finger 118 149 IPR036855 GO:0046872
Stsc181656g00003 368 ProSiteProfiles Zinc finger C3H1-type profile. 120 147 IPR000571 GO:0046872
Stsc181656g00003 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
Stsc181656g00003 368 PANTHER UNKEMPT FAMILY MEMBER 51 367 IPR045234 -
Stsc181656g00003 368 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Stsc181656g00003 368 SMART c3hfinal6 119 146 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181656g00003 Stsc-Chr181656 21619 22884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181656g00003 75 184 C2H2 Transcription Factor Family AT5G12850 65.455 3.62e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181656g00003 zf-CCCH 5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181656g00003 K23047 - gmx:100820375 373.629