Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181654g00004 ATGCAATTCTCTGAGAAAATGCAACCCCAGAAGATGGGGTTTCGCGAGTACATCGAAGCATTGGAGGACGAGAGGAGAAAAATCCAAGTCTTTCACAGAGAGCTTCCTCTGTCCTTAGAACTTGTCGCGCAAGCAATTGAAGCGTGTAGGCAGCAGTTATCTGGAACAACGACAGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCACCGGAAGATCCTGTTTTTGAGGAGTTCATTCCAATCAAGAAAAGGGCTTCACCTGATTGTGATGAAGATGATGAAGAATGTTATGATGATGGTGATGGAGAGCAACATTCTCATAGAAACAAGATTCAAAAGGAGGATAGCACCAACAACAACAACAATAATGATAATAACAGCAGCTGCAGCACTGATAAGAAGAAATCTGACTGGCTCAGATCTGTTCAGTTGTGGAATCCTAATCCCCAACCACCTAAGGAGGATGTGCCTAGAAAAGCATCTGTTGTCGAAGTGAAGAGAAGCATTGGTGGTGCTTTTCAGCCATTCCACAGAGAGGACAACACTGTTGGAAAGGCTAATGCATCGTCGTCGTCATCGAGGCCAATTGCCAAGACTCCTTCTTCTCCACCGGTGCCGGCAACAAGTTCCACGGGACCTGAATCAACCGGAGGCAGCGCCGGAAGCGGCGGCAAAAGAGAGGAGAAAGGACAGGGTCCAAGGAAGCAGCGCCGGTGCTGGTCTCAGGAACTACACAAACGGTTCCTTCATGCCCTTCAGCAGCTTGGAGGTGCAGATTCTGCAACCCCAAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTCACAAATGATGAAGTCAAAAGTCACTTACAGAAATTTCGTCTGCACACAAGAAGGCCAACCACTATGATTCCAAACAATGCAAATTCCCAAACTGCTCCCTTGTTCCTTGTTGGCAACATTTTTGTCCAACCACCAGAATATGCGGCTGCTGCTGTAGCTGCCTCAACAGTTTCATCAGGGGAATTAACCACGGTTACAACTGCAACACATAATGGTATTTATGCACCTGTGGCCACACATCCTGCTACTACTGTTCCCCACAAACAAACTCATCCTTCAATGAAGAACTCACCAATATGCAATAAGTTGGAAGATGTTTCAGATCATTCACATTCAGAAGGAAAGGCTAATCACAGTGAAGGAAATTCTCCTGCCTCATCATCATCCACACATACCACCACAACTTCCCGTGGAAGTTGA 1257 0.4646 MQFSEKMQPQKMGFREYIEALEDERRKIQVFHRELPLSLELVAQAIEACRQQLSGTTTEYNLNGQSECSEQTSPEDPVFEEFIPIKKRASPDCDEDDEECYDDGDGEQHSHRNKIQKEDSTNNNNNNDNNSSCSTDKKKSDWLRSVQLWNPNPQPPKEDVPRKASVVEVKRSIGGAFQPFHREDNTVGKANASSSSSRPIAKTPSSPPVPATSSTGPESTGGSAGSGGKREEKGQGPRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPTTMIPNNANSQTAPLFLVGNIFVQPPEYAAAAVAASTVSSGELTTVTTATHNGIYAPVATHPATTVPHKQTHPSMKNSPICNKLEDVSDHSHSEGKANHSEGNSPASSSSTHTTTTSRGS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181654g00004 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 296 IPR017930 -
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 396 418 - -
Stsc181654g00004 418 Gene3D - 238 296 - -
Stsc181654g00004 418 FunFam Myb family transcription factor 238 296 - -
Stsc181654g00004 418 Pfam Myb-like DNA-binding domain 241 290 IPR001005 -
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 187 222 - -
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 381 395 - -
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 362 418 - -
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 177 243 - -
Stsc181654g00004 418 SUPERFAMILY Homeodomain-like 237 297 IPR009057 -
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 119 133 - -
Stsc181654g00004 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 362 376 - -
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 89 138 - -
Stsc181654g00004 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 374 IPR044787 GO:0003700|GO:0006355
Stsc181654g00004 418 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181654g00004 Stsc-Chr181654 34222 37014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181654g00004 1 358 G2-like Transcription Factor Family AT1G68670 45.119 2.81e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc181654g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181654g00004 - - adu:107491291 666.381