Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181651g00002 ATGGCAGGATCAACTTTATCTTTGGTAATACCTTCAGAATCAAAACTTCCATTGCAGAAATTGACTCCTTGGAATGACCATAAACAAATTATTGTTAGAGTTTCTCGGTTATGGACTCTGGTGGATCCTTCCAGTGAGATCGGAGAACTGGCTTTTCTACAAGGGTTATTGGTGGATGAATCGTTTACTTTAATCCAATTTAGTGTTGCTCGAGATAATATTCAGCATTTTCTGGATATTCTGAAAGAGGGGGCGACATACTCCATTTCAAGATTTATTGTTGTTCCAAATGTTGGAACTTCAAAAGTTAGTCAACATCGTTATAATTTGTTCTTTGGACTAGATACTGAAATACTTCTGCTACCTAATGTCATCATTCCTCGATCTCCTCTCACATTGGAAATGATAGACAAAGTGGTTCAAATGAAACAAGATTTGCCATATCTAATAGATATCATGGGATTTTTTATTTCTGTCACTGAGCATCCTCAGATTGACGATCATCATGGGATAAAGCACAAATTAGTTGTTGTGAAGTTATATTCAAATGGGGTCTATGTCAATTGTAATCTATTCGGAAATTTCTTGCCAAAACTGAAACTTGCCTTGTTGAATTGCGTCACACATCCCCCTATTTTGTTGCTTGAGTCTATGAAAGTCAAAACTTCACAAGGTTTTAGAGTGACTGTGAACCCCGATGTTCCAGAAATTGTTGAATTCGTTAATAGGATTGATCCTTTAAAGCCTTATTTCCTTGATAGTGTCTCAATTAAGAATGGTTCTGTTGTGACTTCCTTGGATGATGAGTTTTTACAACTCTCACAAAATAGGACAATCAGTGAGATCAAACAAAATGATGAGTTGTCCAATTCTCAATTCAGTTGTGGAAAATGTGGAAAAAACATTGAAAATGTTGTTAAAAATTTGAAGGTTATTCTAGCCGTTGAAGATGTAACTGGAACTTCTGAGTTTACACTTCATGAACATTCAGCTGAAATGTTATTCAATTTAAAGATTGAGAATGTTCTAACTGAATTTGAATCTAAATATTCGGGTGGAAATCTGCCTCCTTATCCGGACTTTTTTGATAATTATATTGGAAGAGAAGTTCTTTTCAAAATTGAGTGGAAACATACTGCTTATGTACCTTACACTGATGGATTCAAAGTTCTTAGTTGTTGTTGCGATGATCGGATTATCCAGAAATTCAAAAATGACCCAACTTCAGCTAGAATAATGCAACCAGTTGTTTTTCCCCAATTGTTGAGGATCTATTTCACCAATCTGCTCTACATGGGGAAGTTCCATATATTTGGAATAAGCTTGGTATAA 1332 0.3521 MAGSTLSLVIPSESKLPLQKLTPWNDHKQIIVRVSRLWTLVDPSSEIGELAFLQGLLVDESFTLIQFSVARDNIQHFLDILKEGATYSISRFIVVPNVGTSKVSQHRYNLFFGLDTEILLLPNVIIPRSPLTLEMIDKVVQMKQDLPYLIDIMGFFISVTEHPQIDDHHGIKHKLVVVKLYSNGVYVNCNLFGNFLPKLKLALLNCVTHPPILLLESMKVKTSQGFRVTVNPDVPEIVEFVNRIDPLKPYFLDSVSIKNGSVVTSLDDEFLQLSQNRTISEIKQNDELSNSQFSCGKCGKNIENVVKNLKVILAVEDVTGTSEFTLHEHSAEMLFNLKIENVLTEFESKYSGGNLPPYPDFFDNYIGREVLFKIEWKHTAYVPYTDGFKVLSCCCDDRIIQKFKNDPTSARIMQPVVFPQLLRIYFTNLLYMGKFHIFGISLV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181651g00002 443 SUPERFAMILY Nucleic acid-binding proteins 16 124 IPR012340 -
Stsc181651g00002 443 Pfam Domain of unknown function DUF223 57 118 IPR003871 -
Stsc181651g00002 443 Gene3D - 126 248 IPR012340 -
Stsc181651g00002 443 SUPERFAMILY Nucleic acid-binding proteins 288 384 IPR012340 -
Stsc181651g00002 443 CDD RPA1_DBD_A_like 30 118 - -
Stsc181651g00002 443 SUPERFAMILY Nucleic acid-binding proteins 137 245 IPR012340 -
Stsc181651g00002 443 Gene3D - 15 121 IPR012340 -
Stsc181651g00002 443 Gene3D - 274 389 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181651g00002 Stsc-Chr181651 10205 12898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181651g00002 17 246 Core DNA Replication Machinery Family AT5G08020 23.577 9.94e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181651g00002 - - adu:107470481 271.552