Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181649g00001 ATGTGCGAAGCCTTGCTGAGACGATACCAATTGCTGGAGGAGATTGGTCGTGGTAGATTCGGCACTGTGTTTCGCTGCTTCGACCGTGACTCCGGCGACATTCTCGCATGCAAGGTTATCGATAAGGCTCTTCTTCTTGACCCAACCGATCGTGCTTGCATCGATAACGAGTCAAAGTTCATGACTTTTCTTTCCCCACACCCTAACATTGTCCAGATTTTCGGAGCCTATGAGGATTCCGATTCTCTCTCCATCGTCGCCGAGCTTTGCGAACAAGAAACCCTATTCGACCGAATTGCTCATCGCCCTTTGCCGGAGATAGAGGCCGCCGCCGTAATGAAACAGCTTCTTGAAGCGCTGGCGCATTGCCACAGGCTGGGGATAGCGCACAGGGACATAAAGCCCGATAATTTGCTTTTCGATCGAAGGGGGAATCTCAAAGTTGCGGACTTTGGTTCGGCGGAGTGGTTCGGCGACGGAAGAGGGATGAGTGGGGTGGTGGGGACGCCGTATTACGTGGCGCCGGAGGTGGTGATGGGGAGGGAATACAGTGAGAAAGTTGATGTTTGGAGCTCCGGTGTGATTCTTTACATTATGTTGGGTGCGATTCCACCTTTCTATGGAGAGAGTGCTTCTGAGATTTTTGAGGCTGTTATTAGGGCTAATCTTAGATTCCCAACTAGCATCTTTAGAACTGTTTCTTCTTCTGCTAAGGATCTTCTCAGAAAGATGATTTGCAAGGATCCTTCAAGGAGAATCTCAGCTGAGCAAGCTTTGAGGCATCCATGGATCATGAGTGGAGGAGGTGTGACTAGTGATCTGAACTGA 828 0.5 MCEALLRRYQLLEEIGRGRFGTVFRCFDRDSGDILACKVIDKALLLDPTDRACIDNESKFMTFLSPHPNIVQIFGAYEDSDSLSIVAELCEQETLFDRIAHRPLPEIEAAAVMKQLLEALAHCHRLGIAHRDIKPDNLLFDRRGNLKVADFGSAEWFGDGRGMSGVVGTPYYVAPEVVMGREYSEKVDVWSSGVILYIMLGAIPPFYGESASEIFEAVIRANLRFPTSIFRTVSSSAKDLLRKMICKDPSRRISAEQALRHPWIMSGGGVTSDLN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181649g00001 275 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181649g00001 275 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181649g00001 275 PIRSF ILK 4 260 - -
Stsc181649g00001 275 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Stsc181649g00001 275 CDD STKc_CAMK 8 263 - -
Stsc181649g00001 275 PANTHER SERINE/THREONINE-PROTEIN KINASE 8 269 - -
Stsc181649g00001 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Stsc181649g00001 275 Gene3D Transferase(Phosphotransferase) domain 1 2 273 - -
Stsc181649g00001 275 FunFam Phosphoenolpyruvate carboxylase kinase 1 93 273 - -
Stsc181649g00001 275 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181649g00001 275 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181649g00001 Stsc-Chr181649 12975 14519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181649g00001 9 268 EF-hand Containing Proteins AT1G50700 42.045 5.71e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc181649g00001 Pkinase 5.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181649g00001 - K08794 qsa:O6P43_007686 420.624