Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181648g00003 ATGAGCTTTGTTTTTCGAGGAACAAGACCAGATATAGAAAATGGATTTCCAGGATTTATGCCTGAGAGGCGTACGCTGCGTGTTCATGCAGCACGTCCAAGTAATTCCAATTCTCTGACTTTTCTTGTAACAGTTCTCCTGTTATTCATGATACTGAACTCCCACCAGATGTCACCAAATTTCCTGCTCTGGCTAGTGCTTGGAGTTTTCTTAATGGCTACAATGTTAAGGATGTATGCAACATGTCAGCAGCTTCAAGCTCAAGCCCAAGCTCATCATGCAGCAGCAGCCGGTGGTCTTCTTAGCCACACAGAACTGCGGTTGCAGATGCCACCATCAATAGCACTTGCAAGCCAAGGGCGTTTGCATGGCCTTAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACCCTAAGAGCTCTGGATTCAGATAATGTTTCTACTACACCTTCCATGACTGAGGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCTGGCCCCCAAAGAAGTACCTCCTCAATGCAACAACCTTCATCTTCTACTGCCACTGACACTGAGAAGAAGCAAGATAATTCAAATGGAGTTGAGAGCATGAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGTTTGGAGCAAGTTAGTGTTGGAGATGTGCTCCGTAGCTTACCCTGCTTGCATCAGTTTCACGCTAGTTGCATTGATCCCTGGCTGAGACAACAAGGGACATGTCCTGTCTGTAAATTCCGAGCAGGATCTGGGTGGAATGAAAGTGGACATAATGACATCGCGGACATGGTTTGA 831 0.4525 MSFVFRGTRPDIENGFPGFMPERRTLRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHHAAAAGGLLSHTELRLQMPPSIALASQGRLHGLRLQLALLDREFDDLDYETLRALDSDNVSTTPSMTEEEINALPVHKYKVSGPQRSTSSMQQPSSSTATDTEKKQDNSNGVESMKASDDELTCSVCLEQVSVGDVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWNESGHNDIADMV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181648g00003 276 SUPERFAMILY RING/U-box 211 260 - -
Stsc181648g00003 276 CDD RING-H2_PA-TM-RING 215 257 - -
Stsc181648g00003 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 262 IPR013083 -
Stsc181648g00003 276 Pfam Ring finger domain 215 257 IPR001841 -
Stsc181648g00003 276 PANTHER TARGET OF ERK KINASE MPK-1 1 262 - -
Stsc181648g00003 276 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Stsc181648g00003 276 SMART ring_2 216 256 IPR001841 -
Stsc181648g00003 276 MobiDBLite consensus disorder prediction 152 208 - -
Stsc181648g00003 276 MobiDBLite consensus disorder prediction 174 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181648g00003 Stsc-Chr181648 20109 23854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181648g00003 1 276 C3H Transcription Factor Family AT3G55530 75.269 4.43e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181648g00003 K16283 - gmx:100777936 438.728