Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181644g00003 ATGACTAATTTTGAGAAAGAAGAGGCACCAGCACTTCCAGAAACACAAGTATCTCATAAGAGACATGCTAGTTTTGAGGGATATGGTTGGCCAGTTAGTACTAAGAGAACAAGTCCCCTTATTCATATGAGTGGTCCACTATATGCTACCAATAATGGAGCTGGAAACCTTGTCCACCATGGTCTAGTTGTGACAGTAAACAATGCTGTACCACTTACTACAGAAAAACCTTCTGGTTCGCCTGGCTCAGGCGAAAATCATTGGAACAACAACTATGCTAGAAAGAATGAACACTTGCTTAGGTCTGGAGAACTTGGAATGTGTGATGATCCTTATTGTACTACTTGTCCTGCTAACTTCAAGGGTTCTCATAGGAGAAATTCAAAAGCTTCTACAGCTTTTGATGCTAAGTTACAGAATGCTCTTTACGGGGATGCCAAGTGTTTCGTAAAAAGACTCTTCTCTTTCTGCTCCTCATTCTCTCCAAGAATCATCAACCCTCACACTAAACTTGTACAACAATGGAACAAGTTCTTGGCAATTTCATGTTTATTTGCAATCTTTTTGGATCCCTTATTTTTCTTCTTAATCTATGTTCAAAAGGATTGCAAATGTATTGCTATAAATGGGAAAATGGCATCAATACTTGTAATATTTAGAAGTGTGAATGATTTTGTATATTTCTTAAACATCCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCAGAGTCTAGGGTGGTTGGTGCTGGAGATTTAGTAGATCATCCAAAGAAAATCGCTCTACATTACTTGCACACCTATTTTCCTATTGACTTATTTGTTGCACTTCCGCTTCCTCAGATAATGATAGTGTTTGTGCTTCCAAGGAATTTGGGGATATCGTCAGGAGCGAATTATGCTAAGAATCTTCTTCGCGCTGCAGTTCTTGTGCAGTATATTCCCAGGCTATACAGGTTTCTTCCATTGCTATTTGGCCAATCTCCATCAGGATTCATATTTGAGTCAGCTTGGGCAAATTTCATCATAAATCTTCTCATTTTTATGCTATCTAGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGCTGTGCAGAGGGTTAATCAATGTTTGCGAGATGCCTGCCATAATTCTGGTATTTATGAGTGCATAAAAGTCATTGATTGTGGACACGGTCGTACTTTAGGCGATCAATCTGCTCTTTGGATCAACAATACTGAGGCCATTGCTTGCTTAAATCCCTCCTCTACGGCTACTAATGGATTTCGTTATGGGATCTATGCCAATGCTGTACCACTTACTACAGAAACTGATGTTGTTAACAAATATGTGTATGCTTTATTCTGGGGTTTCCAGCAAATAAGTTCTCTCGGCAGTAGTTTGATCCCAAGTTATTTTGTATGGGAAGTACTTTTCACAATGGCAATCATAGGATTGGGACTCTTGCTTTTCTCGCTTCTCATTGGAAACATGCAGAACTTTCTTCAGTCTCTAGGTCGAAGAAAGCTTGAAATGCAACTTAGAGGCCGTGATGTCGAGCGATGGATGAGCCATCGTCACTTGCCGGAAGATCTAAAAAAGAGAGTGCGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGAGTGAATGAAGAAATGGTTATGGAGAATTTGCCAGAAGATCTTCAGAGAGACATAAGGCGCCATCTCTTTAAATTTATCAAGAAAGTGCGGATTTTCGCCCTGATGGATGAGCCAATCTTAGATGCAATTTGTGAGAGAATAAGACACAAGACATACATCAAAGGAAGTAGAATCTTGAATCATGGAGGCATTATAGAGAAAATGGTCTTCGTTGTTCGCGGAAAATTGGAGAGCATAGGAGTTGATGGAATCGTAGTTCCCTTAGGTGAAGGGGATGCTTGTGGTGAAGAACTTTTGACATGGTATCTTGAACATTCTTTGGTGAGAACAGATGGAAAGAAAGTAAGGGTTCCTGGACAGAGATTGCTTAGCAACAGGACAGTGAGGTGCTTAACAAATGTGGAGGTATTTTCACTCCGAGCAGCTGATCTCGAAGAAGTCACAACCTATTTCACAAGATTCCTGAGGAGTCCACATGTTCAAGGAGCTCTAAGGTATGAATCACCTTATTGGAGATCACTTGCAGCAACACGAATTCAAGTTGCCTGGAGATACAGAAGAAAACGTCTGAGTCGTTCTGATAGCCAAAATTTCTAA 2220 0.4054 MTNFEKEEAPALPETQVSHKRHASFEGYGWPVSTKRTSPLIHMSGPLYATNNGAGNLVHHGLVVTVNNAVPLTTEKPSGSPGSGENHWNNNYARKNEHLLRSGELGMCDDPYCTTCPANFKGSHRRNSKASTAFDAKLQNALYGDAKCFVKRLFSFCSSFSPRIINPHTKLVQQWNKFLAISCLFAIFLDPLFFFLIYVQKDCKCIAINGKMASILVIFRSVNDFVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALHYLHTYFPIDLFVALPLPQIMIVFVLPRNLGISSGANYAKNLLRAAVLVQYIPRLYRFLPLLFGQSPSGFIFESAWANFIINLLIFMLSSHVVGSCWYLFAVQRVNQCLRDACHNSGIYECIKVIDCGHGRTLGDQSALWINNTEAIACLNPSSTATNGFRYGIYANAVPLTTETDVVNKYVYALFWGFQQISSLGSSLIPSYFVWEVLFTMAIIGLGLLLFSLLIGNMQNFLQSLGRRKLEMQLRGRDVERWMSHRHLPEDLKKRVRQAERYNWAATRGVNEEMVMENLPEDLQRDIRRHLFKFIKKVRIFALMDEPILDAICERIRHKTYIKGSRILNHGGIIEKMVFVVRGKLESIGVDGIVVPLGEGDACGEELLTWYLEHSLVRTDGKKVRVPGQRLLSNRTVRCLTNVEVFSLRAADLEEVTTYFTRFLRSPHVQGALRYESPYWRSLAATRIQVAWRYRRKRLSRSDSQNF 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181644g00003 739 SMART cnmp_10 572 704 IPR000595 -
Stsc181644g00003 739 Gene3D Jelly Rolls 570 694 IPR014710 -
Stsc181644g00003 739 MobiDBLite consensus disorder prediction 1 22 - -
Stsc181644g00003 739 SUPERFAMILY cAMP-binding domain-like 500 694 IPR018490 -
Stsc181644g00003 739 Gene3D Helix hairpin bin 499 564 - -
Stsc181644g00003 739 Gene3D - 176 497 - -
Stsc181644g00003 739 PRINTS EAG/ELK/ERG potassium channel family signature 231 240 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181644g00003 739 PRINTS EAG/ELK/ERG potassium channel family signature 442 459 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181644g00003 739 PRINTS EAG/ELK/ERG potassium channel family signature 486 495 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181644g00003 739 PRINTS EAG/ELK/ERG potassium channel family signature 536 543 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181644g00003 739 PRINTS EAG/ELK/ERG potassium channel family signature 468 479 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181644g00003 739 Pfam Ion transport protein 178 500 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc181644g00003 739 SUPERFAMILY Voltage-gated potassium channels 167 500 - -
Stsc181644g00003 739 ProSiteProfiles cAMP/cGMP binding motif profile. 572 640 IPR000595 -
Stsc181644g00003 739 CDD CAP_ED 572 688 IPR000595 -
Stsc181644g00003 739 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 108 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181644g00003 Stsc-Chr181644 28009 32592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181644g00003 27 649 Ion Channels AT3G17700 59.904 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181644g00003 K05391 - gmx:100781973 1070.46