Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181640g00001 ATGGATGTGGCAAAGTTGTACATGAATAATAACGAGTACTCTGAAGAACATGAACATGAAGATGAAGATGATGAGATGATGAAAAAGGAAGAAAAAGAAGAAGAAGAAGTTGTGCTTCCTGGGTTTAGATTCCACCCTACAGATGAAGAGCTTGTTGGGTTTTATCTGAGGAGGAAGGTCGAGAAGAAGCCTCTTAAGATTGAACTTATCAAACATGTTGATATCTATAAATATGATCCATGGGATCTTCCAAAAGTTAGCTCATCAATGGGGGAGAAAGAATGGTATTTCTTTTGCATAAGAGGGAGAAAGTACAGAAACAGCATAAGGCCAAATAGGGTTACAGGATCAGGGTTTTGGAAAGCCACAGGGATTGATAAACCTATATACAGTGTTAATTATAAATATAATAATAACAATAATAGTAAGAAGAAGGAAGAAGAGGGTGATCATCATGAATGCATTGGACTGAAGAAATCTTTGGTTTATTACCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCTCTCAATAATAATAATAATGGAGCAAAATTAAGCAATAATAATAATCAAGAAGCTAATGCTGCCAAGGATCTTCATGAAGCTGAAGTGTGGACATTATGCAGAATATTCAAAAGGATCCCAACATACAAAAAATACACACCAAGTTTGAAAGATTCATCATCAGCATCACCACTCATAATCACCAACAAACCCATCAATAATATTAACCACCAAACTGATTCCTCAGTAACTTCCATATCATGCAGCTTAGAATCTGATACCAACAACAATAGCAAGCCATTCTTGACTTTCACTAACACTATGGACATTCAACAATGTGAAAGGAAGCCTCTTGTTGATAATGTTGATGAAAGGAACAACTTTTTGCTAGACCATGGATCACTACATCAACAAGCTCCAACAACAACTACTGCTACTACTACTACTTTGTCATCATCATCATCATTATACTCATCATGGAACCAGCACCATGTTGTGGAGGATTACTTGTTTGCAAATGAGAATTGGGATGATCTTAGATCTGTGGTTGAGTTTGCCACTGATCCTAATAATAATTCCAAGGTTTTTCTATGA 1125 0.3653 MDVAKLYMNNNEYSEEHEHEDEDDEMMKKEEKEEEEVVLPGFRFHPTDEELVGFYLRRKVEKKPLKIELIKHVDIYKYDPWDLPKVSSSMGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVNYKYNNNNNSKKKEEEGDHHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPLNNNNNGAKLSNNNNQEANAAKDLHEAEVWTLCRIFKRIPTYKKYTPSLKDSSSASPLIITNKPINNINHQTDSSVTSISCSLESDTNNNSKPFLTFTNTMDIQQCERKPLVDNVDERNNFLLDHGSLHQQAPTTTTATTTTLSSSSSLYSSWNQHHVVEDYLFANENWDDLRSVVEFATDPNNNSKVFL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181640g00001 374 FunFam NAC domain-containing protein 35 47 225 - -
Stsc181640g00001 374 MobiDBLite consensus disorder prediction 1 31 - -
Stsc181640g00001 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 35 314 - -
Stsc181640g00001 374 ProSiteProfiles NAC domain profile. 38 222 IPR003441 GO:0003677|GO:0006355
Stsc181640g00001 374 Pfam No apical meristem (NAM) protein 40 183 IPR003441 GO:0003677|GO:0006355
Stsc181640g00001 374 SUPERFAMILY NAC domain 36 221 IPR036093 GO:0003677|GO:0006355
Stsc181640g00001 374 Gene3D NAC domain 47 225 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181640g00001 Stsc-Chr181640 1966 4890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181640g00001 23 222 NAC Transcription Factor Family AT5G39820 58.571 4.04e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181640g00001 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181640g00001 - - ahf:112767137 558.14