Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181631g00010 ATGGCGGACTCAGACAACGAGTCAGGAGGAGCACCGAATGCTGGGAATAACAGCGAACTGTCACCGCGAGAGCAGGACCGATTCCTACCGATAGCAAACGTGAGCAGGATCATGAAGAAGGCGCTTCCCGCTAATGCGAAGATCTCAAAGGACGCCAAAGAAACAGTGCAGGAGTGCGTTTCGGAGTTCATCAGCTTTATCACTGGCGAGGCCTCTGACAAGTGCCAGCGGGAGAAACGGAAGACGATAAACGGCGACGATTTGCTTTGGGCGATGACAACTCTAGGATTCGAAGAGTACGTAGAGCCGCTGAAGATTTATTTGCAGAGGTTTAGGGAGATGGAAGGTGAGAAAAGCGTTGCGGCGCGTGACAAGGACGTGGTTGCAGTCAACGCGGCATACGACTACGGAGGAGGTGGTAGTGGTGGCACAATGGGGATGATGATGAATCAGGGTCATGTGTACGGTACTGGTGCGTTTCATCAAGTGCCAGTGAGTGGTGGAGGTAGTGGTGGTCATGTCATGGGTAAGAGTGGTGGGCCTAATTATCCGGGTGCCGGATCTAATGCAGGTAGACCAAGATAG 585 0.5282 MADSDNESGGAPNAGNNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREMEGEKSVAARDKDVVAVNAAYDYGGGGSGGTMGMMMNQGHVYGTGAFHQVPVSGGGSGGHVMGKSGGPNYPGAGSNAGRPR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181631g00010 194 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc181631g00010 194 MobiDBLite consensus disorder prediction 9 23 - -
Stsc181631g00010 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc181631g00010 194 FunFam Nuclear transcription factor Y subunit B-3 17 136 - -
Stsc181631g00010 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Stsc181631g00010 194 MobiDBLite consensus disorder prediction 166 194 - -
Stsc181631g00010 194 Gene3D Histone, subunit A 16 132 IPR009072 GO:0046982
Stsc181631g00010 194 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Stsc181631g00010 194 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Stsc181631g00010 194 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Stsc181631g00010 194 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181631g00010 194 SUPERFAMILY Histone-fold 25 125 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181631g00010 Stsc-Chr181631 45800 46384 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181631g00010 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.246 1.16e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc181631g00010 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181631g00010 K08065 - qsa:O6P43_013552 286.189