Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181631g00007 ATGGAGAGTGATGGTTCTTCCTGTCATGGCCTCCCTCAAAACTCAAGCTCATACTCAAGCAATGGAGGAAGGAACCCTCAAGAAGAAAACTTGATAACATTGCCCATGTCAAGCGTGCATAGGATCATGAGACAAATTGTTCCAAAGCATGCAAAGATTTGTGATGACACCAAAGACATTGTTCGGAGCTGCATTTGTGAGTTCATAGGTACAATTACAGACGAAGCAATCGAGCATTGCAACACTGATCAACGTAGTGTTCTTACTGCTGATGATATCATACGGGCGATGTCAAGCCTTGGTTTCAAAAACTACGCTGAGCTTCTCGAGGCTCACCTTCGCCATGTGCGCTACATGGGCACTAAGGTGCACTATACCGATGTTCCTCAGTGTCCAGGTGGAAATGTCGTTCCACCACCTACCCCTACACATGGGGGTGCTGGTGGTTTGGATCCACCAACATCCTTTGCTCGTGGCGAGATAGGAAAGGTTTCTGGTGAATTCGGGTTGGCTAGTGGGGCTCGATCAACTAGTGATGGCAATGTCGGAGGGAGTGGGTTTGATCCTCTTGCTTACCTCAATCGTGACAAGTTCCTTTGA 600 0.4767 MESDGSSCHGLPQNSSSYSSNGGRNPQEENLITLPMSSVHRIMRQIVPKHAKICDDTKDIVRSCICEFIGTITDEAIEHCNTDQRSVLTADDIIRAMSSLGFKNYAELLEAHLRHVRYMGTKVHYTDVPQCPGGNVVPPPTPTHGGAGGLDPPTSFARGEIGKVSGEFGLASGARSTSDGNVGGSGFDPLAYLNRDKFL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181631g00007 199 MobiDBLite consensus disorder prediction 1 29 - -
Stsc181631g00007 199 Gene3D Histone, subunit A 25 124 IPR009072 GO:0046982
Stsc181631g00007 199 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Stsc181631g00007 199 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Stsc181631g00007 199 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Stsc181631g00007 199 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Stsc181631g00007 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc181631g00007 199 SUPERFAMILY Histone-fold 32 117 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181631g00007 Stsc-Chr181631 34698 35962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181631g00007 14 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 42.991 1.36e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc181631g00007 CBFD_NFYB_HMF 5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181631g00007 - K15426 bvg:109134727 92.4337