Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181628g00003 ATGGTTTCAACGAGACGCAGTGGATCTCTCTCCACTAACAACAGCAAAAAATCCTCCTCTTCCGACGGTAACAGCAAGCCACCTTCTCCCAAGCGCCCCAAGATCGACAATGCCAGTCCGTCGGAGAAATCGATGCCTGCGGCGGACAATTCCAAGGAGAATGTCGCTCCGGCGGAGCCTGCTTGCGGTCCTGGAGAATGTGGCTCCGCCGGTGCACGGATCGACGGTGCTTCTTCTGCTTCTGAAGAAGGTATGAGCTCCGGGAAGGGCGATGCTATACCGTCTGTGGCCGTTGCTGTGACGCCGCCGATTGCTGATGCCGCATGTCCTTCGTTCTCTTCGCGGAATCTCCATCAGAAGCAAAATCCGAGCTTGGAAGCTTCTGGGGCTCCGTGGTGCAAGCTCTTGTCCCAATCTGCACAGAATTCGAATATTCTTGTTTGTCAGGCGACTTTTACAATTGGTTCCAGTAGGAGCTGCAACTTTGCGATGAAGGAACAAACCGTAAGCGCGAATTTATGCAAGATCAAGCATACCCAGGGTGAGGGAGGTACTGTTGCCGTGCTAGAGAGTAAAGGTAGCAAAGGATCTGTGTTTGTGAATGGCACCCTTGTCAAAAAGAACACAAGCCGTGTCCTTAAGTCAGGCGATGAGCTTGTGTTTGGTATTCTGGGAAATCATTCTTACATTTTTCAGCAAATAAATGCCGAGTCTTCAATTAAAGGAACAGATGTTCAGTGTGGTGCAGGGAAATTCACGCAGCTTAGAAGAAGAACTGGAGACCCTTCCGCTGTAGCTGGAGCTTCTATTTTGGCTTCTCTTTCTAACTTCAGACAGGAATTTGCAAGATTGAAATCCCCATCTCAGAATTCACCTAAGATTCACAAGAGCACTGATGTTTCTGATCATCCTGAAGACAAGCTTGATGATGGCTTGGAATCAGCTCCAAATATGCAATGTGATAAAGCAGCTGATGTTGGAACAAGTGACAAGAATTCCCCAATGGATTGCATTCCAGATGCTGGCACAGAGGCAGGCAATGTAAAACTCTTTGGGGTGAATGATTTCCTAAGTCCTTGCTTCAGGATCTTAGCTCAATCTAATTGTAAACTGAAATTGAGCAAAGGTATCTGTAAACAGGTGTTGGAAGAAAGAAATGGGACACAGGATACGCTGGCTCCATCAACTTCGGGGACATCTGCGCGCTGTGAGGTGTTCAAAGAAGATGTTCATGCTGCAATACTGGATGGAAAGGAAATAGATGTGTCTTTTGACAACTTCCCATATTACTTAAGTGAAAATACCAAAAATGTCCTGGTGGCAGCTTGCTATATACACCTCAGGCATAAAGAACGTGAAAAGTACTCTGCAGATCTTACAACCATAAACCCTCGTATTCTGCTCTCAGGACCTGCAGGTTCTGAAATTTATCAAGAGATGTTGACAAAAGCACTTGCAAAACACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCGCTTTTGGGTGGTATATCTTCCAAGGAAGCTGAGCTAGTCAAAGATGGATTTAATGCCGAAAAATCCTGTAGCAGCACCAAACAAAGTTATACAGCCAGAGACTTGGCTATACATTTCCTTGAGCCTGAACCAAAGTTGGAAATTGATAACTTACCATCTAGCTCGGGAGCAGCTAAAACTTGCCCCTTCAAATTAGGCTTTATGAATGAAAATGTTTATAACATGCCACTGGATATGAAAGGGATTTGGGTTGGGTTGTACACGTGGGAGACTTGGACCAGTGGGAAGAGTGTAACAGTCCTTCATGGTGGTCTTTCACTGCGATTTTCAAAAAATGAGAGGATTGATGTTACTTGCTTGGTTGTTGGGGGCCCACCTAATGGCAGTCGCGGGAAAGTTGTCTTACTATTTGAAGATAATTCCCTTTCTAAAATTGGTGTGAGATTTGATAAGCCAATACCTGATGGTGTTGATCTTGGAGGTGTCTGTGAGCTAGGCCAAGGATTCTTCTGCAATGTCACTGATCTGCGATTGGAAAACAGTGGTGTGGCAGAACTGGACAAACAACTCATTAATACATTGTTTGAGGTTGTTTATAGTGAGAGCAGAAGTTCACCATTCATCTTGTTCATGAAAGATGCTGAGAAATCTATAGTTGGAAATGGAGACCCATGTACCTTTAAAAGTAGGCTTGAAAATCTTCCACACAATGTGGTGGTAATAGGTTCTAACACTCAAACTGACAGTCGAAAGGAGAAGTCACATGCTGGCGGTTTGCTTTTTACAAAATTTGGAAGCAATCAGACTGCCCTTCTTGACTTGGCTTTTCCAGATAGTATTGGGCGATTGCATGACAAGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTCCCAAATAAAATTGCAATTCACATGCCACAGGATGAGGCCCTTCTTGCATCTTGGAAGCAGCAATTGGAACGAGATGTTGAGACTCTTAAAATCCAAGGAAATTCACATCACTTGCGCTCAGTTTTAGCCCGATGTGGAATGGAATGTCAAGGACTTGAGACTTTGTGCATTAAGGATCAGACACTGACTAGTGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGCCATCACCTCATGCAGAATCCTGGAGCTGATGCTGATTCAAAGCTTGTGTTGTCTTGTGAGAGCATACAGTATGGAATAGGGATATTGCATTCCATCCAAAATGAGTCCAAGAGCACGAAGAAGTCTCTTAAGGATGTTGTAACAGAGAATGAGTTCGAAAAGAGGCTTTTGGCTGATGTTATTGCCCCTAATGACATTGATGTTACTTTTGATGACATTGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAACTGGTGATGCTTCCGTTACAGAGGCCTGAGCTGTTTTGCAAGGGGCAATTAACCAAGCCTTGCAAGGGTATCCTACTATTCGGTCCCCCCGGAACAGGAAAAACAATGCTTGCCAAGGCTATTGCTACTAAAGCTGGTGCAAACTTCATCAACATTTCCATGTCAAGCATCACATCGAAGTGGTTTGGTGAGGGTGAAAAATACGTAAAAGCTGTTTTCTCTCTGGCGAGTAAAATTGCTCCAAGTGTTATATTTGTTGACGAAGTTGACAGCATGTTGGGCCGGAGAGAAAATCCAGGGGAGCATGAGGCTATGCGGAAGATGAAAAATGAATTCATGGTAAATTGGGACGGCTTACGGACAAAGGATACAGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTGATAAGGAGACTGCCACGAAGATTGATGGTAAATTTGCCAGATGCTCCCAATAGAGCAAAAATTTTGAAAGTCATACTGGCTAAAGAGGAATTGTCTCCAGATGTGGATTTGGACGCCGTTGCAAATATGACTGATGGATATTCTGGAAGCGATCTTAAGAACCTATGTGTAACTGCTTCACACCGCCCAATCAAGGAAATATTAGAAAAGGAAAAAAAGGAACTCGCTGCTGCTGTAGCCGATGGTCGAGCTCCTCCACCATTATGTGGTAGTGGGGATGTCCGATCTTTAAATATGGAAGACTTCAAATATGCTCAGCAACAGGTATGTGCAAGTGTTTCCTCTGATTCCGTAAACATGAATGAGCTTCAACAATGGAACGACCTTTATGGTGAAGGTGGTTCCAGAGTAAAGAAATCACTCAGCTATTTCATGTGA 3753 0.4407 MVSTRRSGSLSTNNSKKSSSSDGNSKPPSPKRPKIDNASPSEKSMPAADNSKENVAPAEPACGPGECGSAGARIDGASSASEEGMSSGKGDAIPSVAVAVTPPIADAACPSFSSRNLHQKQNPSLEASGAPWCKLLSQSAQNSNILVCQATFTIGSSRSCNFAMKEQTVSANLCKIKHTQGEGGTVAVLESKGSKGSVFVNGTLVKKNTSRVLKSGDELVFGILGNHSYIFQQINAESSIKGTDVQCGAGKFTQLRRRTGDPSAVAGASILASLSNFRQEFARLKSPSQNSPKIHKSTDVSDHPEDKLDDGLESAPNMQCDKAADVGTSDKNSPMDCIPDAGTEAGNVKLFGVNDFLSPCFRILAQSNCKLKLSKGICKQVLEERNGTQDTLAPSTSGTSARCEVFKEDVHAAILDGKEIDVSFDNFPYYLSENTKNVLVAACYIHLRHKEREKYSADLTTINPRILLSGPAGSEIYQEMLTKALAKHFGAKLLIFDSHSLLGGISSKEAELVKDGFNAEKSCSSTKQSYTARDLAIHFLEPEPKLEIDNLPSSSGAAKTCPFKLGFMNENVYNMPLDMKGIWVGLYTWETWTSGKSVTVLHGGLSLRFSKNERIDVTCLVVGGPPNGSRGKVVLLFEDNSLSKIGVRFDKPIPDGVDLGGVCELGQGFFCNVTDLRLENSGVAELDKQLINTLFEVVYSESRSSPFILFMKDAEKSIVGNGDPCTFKSRLENLPHNVVVIGSNTQTDSRKEKSHAGGLLFTKFGSNQTALLDLAFPDSIGRLHDKGKEVPKPNKTLTKLFPNKIAIHMPQDEALLASWKQQLERDVETLKIQGNSHHLRSVLARCGMECQGLETLCIKDQTLTSENAEKIIGWALSHHLMQNPGADADSKLVLSCESIQYGIGILHSIQNESKSTKKSLKDVVTENEFEKRLLADVIAPNDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATKAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVANMTDGYSGSDLKNLCVTASHRPIKEILEKEKKELAAAVADGRAPPPLCGSGDVRSLNMEDFKYAQQQVCASVSSDSVNMNELQQWNDLYGEGGSRVKKSLSYFM 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181628g00003 1250 MobiDBLite consensus disorder prediction 284 316 - -
Stsc181628g00003 1250 SMART AAA_5 982 1119 IPR003593 GO:0016887
Stsc181628g00003 1250 Pfam AAA+ lid domain 1139 1174 IPR041569 -
Stsc181628g00003 1250 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 944 1120 - -
Stsc181628g00003 1250 MobiDBLite consensus disorder prediction 1 27 - -
Stsc181628g00003 1250 ProSitePatterns AAA-protein family signature. 1089 1108 IPR003960 GO:0005524|GO:0016887
Stsc181628g00003 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 943 1188 IPR027417 -
Stsc181628g00003 1250 CDD RecA-like_ATAD1 949 1115 - -
Stsc181628g00003 1250 Gene3D - 131 240 - -
Stsc181628g00003 1250 MobiDBLite consensus disorder prediction 296 312 - -
Stsc181628g00003 1250 CDD FHA 134 232 - -
Stsc181628g00003 1250 Pfam FHA domain 153 222 IPR000253 GO:0005515
Stsc181628g00003 1250 Gene3D - 1118 1212 - -
Stsc181628g00003 1250 SUPERFAMILY SMAD/FHA domain 131 225 IPR008984 GO:0005515
Stsc181628g00003 1250 Gene3D - 944 1224 IPR027417 -
Stsc181628g00003 1250 MobiDBLite consensus disorder prediction 1 89 - -
Stsc181628g00003 1250 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 405 1249 - -
Stsc181628g00003 1250 Pfam ATPase family associated with various cellular activities (AAA) 986 1115 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181628g00003 Stsc-Chr181628 18977 28926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181628g00003 945 1185 Calmodulin-binding Proteins AT3G56690 39.516 3.81e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181628g00003 - - gmx:100816731 1803.49