Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181628g00001 ATGGAGATTATTGAAGGTGTCTCCGGTGCCCACTTCTCCGGTTGGCGGCCTTCATCCACCGCTCCTACTTCCCCTTCTTCTCCCACCGCTCCCTCTCAACAACCCTTCGTTATCGGGGTTTCTGGAGGCACCGCATCGGGGAAGACCACAGTGTGTGAATTGATCATTCAACAACTGCAAGATTGTAGAGTTGTTCTTGTTTGTCAGGATTCATTCTACCGTGGACTAACAAATGAAGAGCTGAAACACGTTCATAAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACCCTGAGCAAGCTCAAATCTGGGCATTCAGTTCAGGTTCCAATATATGATTTCAAGCTCCATCAGAGATCTTCTGATATTTTCCGACTGGTGAATGCATCTGAAGTAATCATTATGGAGGGTATATTGGTTTTTCATGAGCAAAGAGTCCGTGACATGATGAATATGAAAATATTTGTTGATGCAGATCCTGACGTAAGGCTTGCCCGCAGAATAAAACGTGACACTGTTGATAGAGGTAGAGATGTACACTCCGTTCTGGAACAGTATGCAAAATTTGTTAAGCCTGCCTTTGAAGATTTTATTCTTCCATCCAAGAAGTATGCTGACATCATCATACCTCGTGGGGGAGACAATGGAGTAGCAATCGACTTGATAGTAGTGGAACACGGTCTTGGTTACTTCCCATTTAAAGAGAAACAAATTATCACCCCTACAGGAGCAACTTATACTGGAGTTGAATTTTGTAAACAATTGTGTGGAGTATCCATTATACGAAGTGGTGAAAGCATGGAAAACGCTTTGCGTGCATGCTGTAAAGGAATAAAAATAGGAAAGATACTCATCCACCGTCAAGGTGAGGAAACCCAGCTTATCTATGAGAAGCTTCCGAACGATATTTCAGAGAGACATGTTCTTCTGATGGATCCTGTACTCAGTACAGGTAACACTGCCAGCCAAGCAATTGAGCTTCTTATAAACAAAGGAGTTCCAGAGGCCAATATAATATTCCTCAACCTCATCTCTGCTCCTGAGGGAATAAATTGTGTATGCACACGTTTTCCGCACCTCAAGATTATCACTTCGGAGATTGAAGAGGGACTAAATGACCAGTGCCGTGTCATACCAGGTTTGGGAGAATTTGGTGACCGCTATTTTGGCACAGACGATTAG 1200 0.4292 MEIIEGVSGAHFSGWRPSSTAPTSPSSPTAPSQQPFVIGVSGGTASGKTTVCELIIQQLQDCRVVLVCQDSFYRGLTNEELKHVHKYNFDHPDAFDTEQLVETLSKLKSGHSVQVPIYDFKLHQRSSDIFRLVNASEVIIMEGILVFHEQRVRDMMNMKIFVDADPDVRLARRIKRDTVDRGRDVHSVLEQYAKFVKPAFEDFILPSKKYADIIIPRGGDNGVAIDLIVVEHGLGYFPFKEKQIITPTGATYTGVEFCKQLCGVSIIRSGESMENALRACCKGIKIGKILIHRQGEETQLIYEKLPNDISERHVLLMDPVLSTGNTASQAIELLINKGVPEANIIFLNLISAPEGINCVCTRFPHLKIITSEIEEGLNDQCRVIPGLGEFGDRYFGTDD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181628g00001 399 FunFam Uridine kinase 32 233 - -
Stsc181628g00001 399 Gene3D - 229 398 IPR029057 -
Stsc181628g00001 399 CDD PRTases_typeI 259 356 IPR000836 -
Stsc181628g00001 399 FunFam Probable uracil phosphoribosyltransferase 220 397 - -
Stsc181628g00001 399 PANTHER URIDINE KINASE 30 307 - -
Stsc181628g00001 399 Pfam Uracil phosphoribosyltransferase 225 397 - -
Stsc181628g00001 399 MobiDBLite consensus disorder prediction 13 36 - -
Stsc181628g00001 399 Pfam Phosphoribulokinase / Uridine kinase family 37 223 IPR006083 GO:0005524|GO:0016301
Stsc181628g00001 399 MobiDBLite consensus disorder prediction 1 36 - -
Stsc181628g00001 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 228 IPR027417 -
Stsc181628g00001 399 Gene3D - 33 228 IPR027417 -
Stsc181628g00001 399 NCBIfam uridine kinase 34 230 IPR000764 -
Stsc181628g00001 399 CDD UMPK 37 229 IPR000764 -
Stsc181628g00001 399 PRINTS Uridine kinase signature 110 125 - -
Stsc181628g00001 399 PRINTS Uridine kinase signature 203 216 - -
Stsc181628g00001 399 PRINTS Uridine kinase signature 181 192 - -
Stsc181628g00001 399 PRINTS Uridine kinase signature 167 177 - -
Stsc181628g00001 399 PRINTS Uridine kinase signature 65 76 - -
Stsc181628g00001 399 PRINTS Uridine kinase signature 35 52 - -
Stsc181628g00001 399 SUPERFAMILY PRTase-like 228 398 IPR029057 -
Stsc181628g00001 399 ProSiteProfiles UvrC family, homology region profile. 123 219 IPR001162 GO:0009381
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181628g00001 Stsc-Chr181628 6256 10069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181628g00001 4 399 PRT Gene Family AT5G40870 62.368 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181628g00001 K00876 - gmx:100816209 600.512