Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181626g00003 ATGGATTCCAAATCTCAGTTTCCAGAACATTCTTCTCTCTCCAGAGTTCTCCAAGGCTTTCTGGATCGGGTCGGATTCGGATTTCGGGCACCCCCTCTTAAGGTTAATAATAACAAGAAGGATCGTCACAGGAAGATTAATGGAAGAGAAAGCCGGATTCTGTTGCCACCATTGTGTGCTGCACGCGTGTTCCAGCTCACAAGGGAGCTTCGCCACAAGACTCATGGTGACACAATTGACTGGCTCTTGCGCCATGCTCAACCTTCCATTCTTGCTGCAACAACAACTGCCAATAGGAGAATGCCATCATCATCATCAAACACCATTCATCATGATGATGATAATGGGTGGTTGGAGTTTGATGTTCTTGCAAACCTTGGTGTTGGGTTTTCTGCTAATGAAATTGCAGTCATCCAAGCAATGATGAAGAGCTTCACCTAA 441 0.4558 MDSKSQFPEHSSLSRVLQGFLDRVGFGFRAPPLKVNNNKKDRHRKINGRESRILLPPLCAARVFQLTRELRHKTHGDTIDWLLRHAQPSILAATTTANRRMPSSSSNTIHHDDDNGWLEFDVLANLGVGFSANEIAVIQAMMKSFT 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181626g00003 146 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 102 IPR005333 GO:0003700
Stsc181626g00003 146 Pfam TCP family transcription factor 38 106 IPR017887 -
Stsc181626g00003 146 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181626g00003 Stsc-Chr181626 32337 34059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181626g00003 29 97 TCP Transcription Factor Family AT3G47620 60.870 2.85e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc181626g00003 TCP 6.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181626g00003 - - ahf:112736155 171.4