Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181624g00011 ATGGCATCTGCTTCTTGTGTCAGTAAGAGCCCCTTACAAATGAAAGATGCTGTGGCAGCTTCAGCTTCAGCTTCAGCTTCAGGGTATTATGTGTATCCTCCACCACAAGCAAGCTATGAGGAGGTTGCAAACAATCCCAAGCTCTTCATAGAAACCTTGGAGAAGCTACACTCTTCTATGGGCACCAAGTTCATGATTCCCATTATTGGGGGGAGAGAATTAGATTTGCATCGACTCTTTGTTGAAGTAACTTCCAGAGGAGGTATTGAGAAGATAATCAAAGAGAGAAAATGGAAGGAAGTAACTGCAACTTTCAATTTTCCATCGACAGCTACAAATGCCTCTTTTGTTCTGCGGAAGTACTATGCTTCGTTGCTTTACCATTATGAACAAATCTACTATTTCAAAGCCCCTGGATGGAGCCCAGCTGCTTCTAGCTTTTTCTCTACAGCTGGTGGTCTGCAGTGTCAATCATCCATTCCAGTTCCAGTGCAAAAGGCACAGTTTATGCCGACATCATCGGGATTTCAATCACCGGTCTTTCCACAGTCAAGCGCTAATGCTGCTGAATTGTCTGAAGCCATGATAAAATCTTCAGGAGGGTCTCAGGTGATTGGGGTCATTGATGGAAAGTTTGAAAGTGGCTATCTAGTTACTGTAACAATAGGTTCAGAGAAACTTAAAGGCGTGCTCTATCAGGCTCCACAAAACCCTGGATTGCCTACTTCTCATCACGGAGTTTTGGGTAACAGCAGTGGTACCTCTGCCCCGTTAGGTGTCCATCGGCGCCGGCGCAGAAAGAAATCAGAAATAAAGCGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGCGGTTACAATTTCTTTTTCGCGGAACAGCATGCAAGGCTAAAAGCACACCATCATGGGAAGGACAGGGAGATTAGTAGGATCATTGGTGAACTCTGGAACAAGTTGAATGAATCAGAAAGAGTAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGGTATAGAGTGGAAATGGAGGATTATCGCGAGAAGCAGAAGATGGGCCAAGTTATCAGTGATGCCGTGCCTCTGCAGCAGCGGCTTCCTGAGGACATGAAATTGGACGAAGCGGACGGTGACTCTTTTCAAACACCAGAGGAAAGCAGTACTGGTGGAAGCGACTATGACGATGATAGAGCTATGGACAAAGATTTCGACGAGGATGCATCGCCGGTTGCTGGCTTGGGTGCTGAATCTAGCTGCATGGGTTCGGAGAAGTCACCCAATGGAGGTTTATGA 1290 0.4581 MASASCVSKSPLQMKDAVAASASASASGYYVYPPPQASYEEVANNPKLFIETLEKLHSSMGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKERKWKEVTATFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAPGWSPAASSFFSTAGGLQCQSSIPVPVQKAQFMPTSSGFQSPVFPQSSANAAELSEAMIKSSGGSQVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPGLPTSHHGVLGNSSGTSAPLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKAHHHGKDREISRIIGELWNKLNESERVVYQEKAMKDKERYRVEMEDYREKQKMGQVISDAVPLQQRLPEDMKLDEADGDSFQTPEESSTGGSDYDDDRAMDKDFDEDASPVAGLGAESSCMGSEKSPNGGL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181624g00011 429 SMART hmgende2 278 347 IPR009071 -
Stsc181624g00011 429 FunFam High mobility group B protein 15 261 356 - -
Stsc181624g00011 429 Gene3D High mobility group box domain 263 358 IPR036910 -
Stsc181624g00011 429 MobiDBLite consensus disorder prediction 241 257 - -
Stsc181624g00011 429 FunFam High mobility group B protein 15 37 148 - -
Stsc181624g00011 429 ProSiteProfiles ARID domain profile. 43 134 IPR001606 GO:0003677
Stsc181624g00011 429 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 383 - -
Stsc181624g00011 429 MobiDBLite consensus disorder prediction 241 287 - -
Stsc181624g00011 429 MobiDBLite consensus disorder prediction 389 406 - -
Stsc181624g00011 429 Pfam ARID/BRIGHT DNA binding domain 47 130 IPR001606 GO:0003677
Stsc181624g00011 429 Gene3D - 36 139 IPR036431 GO:0003677
Stsc181624g00011 429 SUPERFAMILY ARID-like 38 139 IPR036431 GO:0003677
Stsc181624g00011 429 CDD HMG-box_AtHMGB9-like 279 345 - -
Stsc181624g00011 429 MobiDBLite consensus disorder prediction 367 429 - -
Stsc181624g00011 429 Coils Coil 328 348 - -
Stsc181624g00011 429 SMART bright_3 44 135 IPR001606 GO:0003677
Stsc181624g00011 429 CDD ARID_HMGB9-like 45 130 IPR045303 GO:0003677
Stsc181624g00011 429 SMART ARID_2 40 130 - -
Stsc181624g00011 429 Pfam HMG (high mobility group) box 279 346 IPR009071 -
Stsc181624g00011 429 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 279 346 IPR009071 -
Stsc181624g00011 429 SUPERFAMILY HMG-box 267 350 IPR036910 -
Stsc181624g00011 429 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181624g00011 Stsc-Chr181624 36407 39450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181624g00011 1 375 ARID Transcription Factor Family AT1G04880 60.207 1.47e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc181624g00011 ARID 1.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181624g00011 - - gmx:100783284 579.711