Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181623g00006 ATGTCACCGCCGGCGTTCAGCATAGCGGGGGAGGAGGAGGAGGAGGAGGAGGGGAAAAGCAGTGTCAATTTGTTGGTTTCCGAGTTGAAAGAGCGAAACTACATGGATTTGTCTGGTTGTTCTTCCGGTGACAGTTTGGTTTCGCCGTTACCGGATGAGCATAAAAGTAATCTGAACCTGAAAGCTACTGAACTGAGGCTTGGTCTCCCGGGATCTGAGTCTCCTGAGAGAGATTCTGATAATTGCTTAAGAAGCTCAACTCAGTTTGATGAGAAACATCTCTTCCCCTTGTGCCTCTCCATAGATGATCATCATTATTCCCCGGCAAAGGCTGCTGTTTTGGGTAACAAAAGAGGGTTCTCGGATGTAATGAATGGGTTCCTAGAGGGTAAATTCTTATCTAATTCAGCAGTGAATACAATTCTGTCACCAAGGCCTTCTTCTAACTTGGGATTAAATCCTGGTTCTATGCTTGAGAATCTTGGGGTTCAACAAGCCAAAATGAAAGAGGTATCAACTACAAATGTTGGGGTCGAGACGCCTCATGCTTTGGACGAGACGAAGAACAGTCTTAATGGTTCTGCGAATACTAATAGCAGTGCACCAGCTACCAAGGCTCAGGTCGTGGGGTGGCCTCCTATAAGATCATTTAGGAAGAATTCGCTGGCAACTAGTTCGAAAAGCACGGAAGAAGTAGATGGAAAACCGGGGAGGTGTAGTGCACTGTTTGTGAAGGTGAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATACCCGGAACTATGTTCTGCTCTAGAGAAGATGTTCAGCTGTTTTACTATAAGTCAATGCGGATCTTATGGGACTCTGGGAAAGGAGGTGCTGAATGAAACCAAGCTGAAGGATCTTCTTCACGGTTCGGAATATGTTCTTACTTATGAAGACAAAGATAGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTTATCGAAACATGCCGGAGGCTGAGGATCATGAAGAGTTCTGAAGCAATTGGGCTTGCTCCCAGGGCTGTTGAAAAAAGCAAGACCAGGAACTAG 1086 0.453 MSPPAFSIAGEEEEEEEGKSSVNLLVSELKERNYMDLSGCSSGDSLVSPLPDEHKSNLNLKATELRLGLPGSESPERDSDNCLRSSTQFDEKHLFPLCLSIDDHHYSPAKAAVLGNKRGFSDVMNGFLEGKFLSNSAVNTILSPRPSSNLGLNPGSMLENLGVQQAKMKEVSTTNVGVETPHALDETKNSLNGSANTNSSAPATKAQVVGWPPIRSFRKNSLATSSKSTEEVDGKPGRCSALFVKVSMDGAPYLRKVDLKNYSTYPELCSALEKMFSCFTISQCGSYGTLGKEVLNETKLKDLLHGSEYVLTYEDKDSDWMLVGDVPWEMFIETCRRLRIMKSSEAIGLAPRAVEKSKTRN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181623g00006 361 MobiDBLite consensus disorder prediction 1 21 - -
Stsc181623g00006 361 FunFam Auxin-responsive protein 237 353 - -
Stsc181623g00006 361 Gene3D - 237 355 - -
Stsc181623g00006 361 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 58 348 IPR003311 GO:0005634|GO:0006355
Stsc181623g00006 361 MobiDBLite consensus disorder prediction 185 205 - -
Stsc181623g00006 361 SUPERFAMILY CAD & PB1 domains 240 342 - -
Stsc181623g00006 361 ProSiteProfiles PB1 domain profile. 241 343 IPR000270 GO:0005515
Stsc181623g00006 361 Pfam AUX/IAA family 63 352 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181623g00006 Stsc-Chr181623 40481 43518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181623g00006 255 346 B3 DNA Binding Superfamily AT1G19220 32.609 8.04e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc181623g00006 AUX_IAA 1e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181623g00006 K14484 - gmx:100815447 511.146