Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181622g00004 ATGGAATATACCAAGAATGGGGAACAACATGGTCTCATCAATGAACTTATCCAAGGGAAGGAGCTGGCAAAGCAGCTATGCAACACTCTCCTTTCTTCTTCTTCTTGTTCATCCAATGAATTCTTAATTGACAAGATACTCTCCACCTATGAGAAAGCCCTCACCATGCTTAACTCTGACTCCAATCTCATTTCTACAAATGGAAGCCCTTCAAGGAGTGACCTCATTCATGATGATGAATTCAAGTACAAACCCCCCCTCAAAAAGAGGAAGACTATGCCAAAATGGACAGAGAAAGTGAAGGTATGCTCAGAAACAGGACTTGAGGGGTCTTTGGATGATGGCTATTGCTGGAGAAAATATGGCCAAAAGGATATTCTTGGAGCCAAGTTCCCAAGAGGATATTACAGATGCACATATAGAAATGTACAAGGGTGCCTTGCTACAAAGCAAGTCCAAAAATCAGATCAAGACCCAACAATGATTGAGGTGAACTACAGAGGAAGACACACGTGCACTCAATCTAAGCATTCCAACAAATCATTCTCATCCAAAACAAAGTTGCCTTTGTTGCAGAAGAACCAATCCCACAAGTTCCAAACCAACCAACCACAAAAGCAGGAGAAAATGAAACAAACCCAAGAGGAAAGTTTCACCTTTGAAGCAAAGCTTGAGTTGGACACCAACACCAACACCATAACCAAGGATGATGATATCTTCCCATGGTTCTGCTACCTTTCTCCATCAATTGGATCCGAAAACGGAGATAACCACAGCATATTGCTATCTGAGCCCATGTTCTTGGAAAGCTTTTCTCCTGATACGGCACCATTCATGTCACCATCAACTTCAGAATCAGACCTTTTCTGTTTGTCACCATGCCAATTTGGAAGCAGCAATAGTAATGGAATAGTCCAAACTTCAGAATCTGATATCACTGATATACTTTCAGCTCCAAACTCGGTAACCAATTCTCCAATCATGGATTTCGATATGTTTCTTGATAAAGAAGATTTTGACACCGTATTCCCTTTCAACACGCCTGAATATTCTTCTTTGTGA 1062 0.4115 MEYTKNGEQHGLINELIQGKELAKQLCNTLLSSSSCSSNEFLIDKILSTYEKALTMLNSDSNLISTNGSPSRSDLIHDDEFKYKPPLKKRKTMPKWTEKVKVCSETGLEGSLDDGYCWRKYGQKDILGAKFPRGYYRCTYRNVQGCLATKQVQKSDQDPTMIEVNYRGRHTCTQSKHSNKSFSSKTKLPLLQKNQSHKFQTNQPQKQEKMKQTQEESFTFEAKLELDTNTNTITKDDDIFPWFCYLSPSIGSENGDNHSILLSEPMFLESFSPDTAPFMSPSTSESDLFCLSPCQFGSSNSNGIVQTSESDITDILSAPNSVTNSPIMDFDMFLDKEDFDTVFPFNTPEYSSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181622g00004 353 SUPERFAMILY WRKY DNA-binding domain 111 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181622g00004 353 Gene3D WRKY domain 98 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181622g00004 353 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 297 IPR044810 GO:0003700
Stsc181622g00004 353 SMART WRKY_cls 112 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181622g00004 353 MobiDBLite consensus disorder prediction 193 212 - -
Stsc181622g00004 353 Pfam WRKY DNA -binding domain 113 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181622g00004 353 ProSiteProfiles WRKY domain profile. 107 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181622g00004 353 MobiDBLite consensus disorder prediction 193 208 - -
Stsc181622g00004 353 FunFam WRKY transcription factor 53 98 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181622g00004 Stsc-Chr181622 11772 13397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181622g00004 8 329 WRKY Transcription Factor Family AT2G46400 39.634 1.12e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181622g00004 WRKY 5.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181622g00004 - - gmx:100790050 370.548