Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181620g00006 ATGTCTAAAGGAAAACAGCCCCAAGATATGATGATGATGGATATTGATCTCTCTTTGAAGATAGATCGTGTTGAAGAAAATAAACAAGAAGAAGAAACAACACCAAAGGTAGCAGATGAAGCATCAGTGAAAGTGGATCTCAAGAAGGAAGAAATAATGGCACTTAATATTAACACGGAAGAGTTTGTTCCTGAAGCCGCAGCTGGTGAAATTGAAGATGATGCATCTGTTGTTGAATTACCTTCGCAAGATAACACTAAAGCAAGAGAGTTGAGTGTGTTACAAATGGAGATGGAGAGCATGAAAGAGGAGAACAAAGTGCTGAGGAAAGTGGTGGAACAAACCATGAAAGACTACTATGATCTGCAACTCAAATTTTCAATCATTCAGGAAAACAATAATAAAAATAAAAGCAAGATTCCTTCATGTGATTCGGATCATCAAATTTCTCTCTCACTTCATGGTCATAATCATCATGAAGAAGAAAATGCAATAATAAGCAACCAAAATGATGAAGGGCTGCGGAGAATTCATTATCACGACGAGATGTTCAAGTTTAACAAAAAAATTCAAAGAGGTTCTTCATCCTTTGCAAACACTGATTTACTTACAGAAAGTGAATTGGGGTTATCGCTAAGGTTGCAGACGAGTAGCACAAGCCAAAAGAGAAAGGAAACCGATGATGAGGAGGAAGATCCAAAGCAAGAAGAAGAAGAGGAGGAGGCGGAGGAGGAGAAAAAGGATCAATCTACAAATATTTTATCACCGGCTAACAAATTGCAGCGGACACAGGAGTTCCAGGGTGCGCCGCCTCCTAACAGAAAAGCTAGGGTTTCAGTTAGAGCAAGATGCGAGGCAGCCACCATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAGATTGCTAAAGGAAATCCATGTCCACGAGCTTATTATCGTTGCACTGTAGCCCCTGGCTGCCCCGTTAGGAAACAGGTACAAAGATGCATAGATGACATGTCGATACTAATAACAACATACGAAGGAACACACAATCATCCACTTCCAGTGGGTGCAACTGCAATGGCTTCTTCAGCAGCAGCTTCCTTCATGTTGCTCGACTCATCAACCAATCATCATCATCATGCCACCTCATCATCATCAACCTTCAACCACCCACTGCTACTAAACCCCAATTTCAGAAGCATGAACCCTAGTAACGACCCCTCCAAAGGAGTTGTTCTGGACCTCATCACCAATGACCAATCACCATCCCTACGTTTTCCCAGTTTTGCCGAACCGCGTTTCGCTTGGATGCAAAACAATAATAACAATGGGGGTTTTGCAATGACAGCAAGTAGCTTTCATCATCATCAGAAGGGTCCTCGAATAAGGGAGCATGGCGAAGAAAGCAAGAAGCAGGTAGTAGATGAGATGACGAAGGTGTCGGCGATTGCGTCAGATCCTAAATTTAGGGTTGCTGTTGCGGCGGCCATAACATCAATCATGAATAATAAAGAGGCAGGTATAGGAGGAGGGAGCAGCAGCAACAGCAAATGGGTGTTAGATAATAATTCTCTCTCCAAAGATGCTAATTCATAA 1584 0.4217 MSKGKQPQDMMMMDIDLSLKIDRVEENKQEEETTPKVADEASVKVDLKKEEIMALNINTEEFVPEAAAGEIEDDASVVELPSQDNTKARELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQLKFSIIQENNNKNKSKIPSCDSDHQISLSLHGHNHHEEENAIISNQNDEGLRRIHYHDEMFKFNKKIQRGSSSFANTDLLTESELGLSLRLQTSSTSQKRKETDDEEEDPKQEEEEEEAEEEKKDQSTNILSPANKLQRTQEFQGAPPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASSAAASFMLLDSSTNHHHHATSSSSTFNHPLLLNPNFRSMNPSNDPSKGVVLDLITNDQSPSLRFPSFAEPRFAWMQNNNNNGGFAMTASSFHHHQKGPRIREHGEESKKQVVDEMTKVSAIASDPKFRVAVAAAITSIMNNKEAGIGGGSSSNSKWVLDNNSLSKDANS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181620g00006 527 SUPERFAMILY WRKY DNA-binding domain 282 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00006 527 MobiDBLite consensus disorder prediction 230 245 - -
Stsc181620g00006 527 MobiDBLite consensus disorder prediction 213 279 - -
Stsc181620g00006 527 MobiDBLite consensus disorder prediction 251 268 - -
Stsc181620g00006 527 Pfam WRKY DNA -binding domain 290 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00006 527 Gene3D WRKY domain 274 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00006 527 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 73 502 IPR044810 GO:0003700
Stsc181620g00006 527 FunFam probable WRKY transcription factor 31 274 351 - -
Stsc181620g00006 527 SMART WRKY_cls 289 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00006 527 ProSiteProfiles WRKY domain profile. 284 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00006 527 Coils Coil 91 118 - -
Stsc181620g00006 527 MobiDBLite consensus disorder prediction 501 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181620g00006 Stsc-Chr181620 30162 32862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181620g00006 94 406 WRKY Transcription Factor Family AT1G68150 47.059 1.99e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181620g00006 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181620g00006 - - aip:107631585 589.341