LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181620g00005	ATGGAGTCCATCTGGAAGATCAGAACTAAGACCAGCCACAGCAGCAGGAAGCCCAAGCTAGAGCGCCTCAACGCCAGAAAGAACATCCATTACAACCCACCTGAAACTCCTCATTCCACATCTTCTTCCTTTTCCTCTTCCTCTTCTCTCCAACACCAAACTAGCTTTAGGGTTACAGACGGCGATTTCGACATAATCTTCCAAAGCCTCGGCCTTTCTGGCCCCGAAGATTTTGCTATCCCAACTGCAGATTGGGAAGCCAGGAAGGTTCGCTTTGCTTCTCCTACTTCTAATGCTGCCGCTGAGCCCAAAGAGGATGTAATTTCCGCTGAATTGAAATCTAGGGTTGTGCTTGATTCCGATTCCCAGCTTAAAAATGACAACTTTTCGCGACCAGTTGAAGTGGGAGGCTCCAAGTTTGGTGTTTCTTCAGATGTGAAGGTTTTGATTGGTAAAAATGGAGATGGGGTTGGCGGGGCAGCGATCAAGGGTGCTAGGCCTCCGCTTTTGAGGCCAATTGTTGATGGGGTTGGTTCGAATTGGGATTTGAAGAGGTCATTTGGTCCCCAAGATAATTTTTCGCCTTCGTCTTCTGGTGAAATTGGCTTTGTTGGTAGGGTGAGAAATGGGGACAGAAGCATGCTTTTTACGGATTCAGGTTCGTTTACTACGTCCCATGATGATGATAGTGATATTGGCGGGGAAAGAGCTTGTCCTTGTTCTGGTTCTGGCGCGGTTGATGCTTCCTTAAATGAGTGGTTTAACCGAACTTTCTCGTCGTGGCAAAAAGGTGACGTTTTGGGAAAGGGGTCGTTTGGAACCGTCTATGAAGGTTTTACAGATGATGGATTCTTTTTTGCGGTGAAGGAAGCATCTTTGCTGGATGAAGGTAGTAACCAGGGTAAACAGAGCATTTTCCAACTTCGGCAGGAAATATCTCTTTTGAGTCGGTTTCGACATGAGAACATAGTTCGATATTTTGGCACTCAAGAGGACCAAAGTTCACTATATATCTTCCTTGAACTCGTGCCAAAAGGGTCATTGTTAAGTCTCTATCAGAAGTATAGTTTAAATGATTCTCATGTTTCTGCGTACACATGGCAGATTTTGCATGGCTTGAAGTATCTTCACGATCAAAATGTGGTTCACAGGGATATCAAGTGTGCCAATATCCTGGTTGATGTAAATGGGTCTGTCAAACTCGCGGATTTTGGGTTGGCAAAGGCAACTAAACTTAATGATGTTAAATCAAGCAAAGGATCCCCATACTGGATGGCCCCAGAGGTTGTTAACTTGAGGAATGATGGGTATGGACTAGCAGCTGATATATGGAGCTTAGGTTGTACGGTCTTGGAGATGTTGATAGGGAAACCTCCTTACTCTGATCTGGAAGGAATGCAAGCCTTATTTCGGATTGGGAGAGGAGAACCTCCACCTATTCCTGAAACATTATCCAAAGATGCCAGGGATTTTATTCTTGAGTGCTTACAAGTTAACCCAAGTAAACGCCCAACTGCGGCTCAGTTATTGGAACATCCATTTCTAAGGAGACAATTCCTTTCTTCCTTTTCAGCTGCGTCGCCACAAATTAAAAGCTTTAAGAGCCTATAG	1611	0.4475	MESIWKIRTKTSHSSRKPKLERLNARKNIHYNPPETPHSTSSSFSSSSSLQHQTSFRVTDGDFDIIFQSLGLSGPEDFAIPTADWEARKVRFASPTSNAAAEPKEDVISAELKSRVVLDSDSQLKNDNFSRPVEVGGSKFGVSSDVKVLIGKNGDGVGGAAIKGARPPLLRPIVDGVGSNWDLKRSFGPQDNFSPSSSGEIGFVGRVRNGDRSMLFTDSGSFTTSHDDDSDIGGERACPCSGSGAVDASLNEWFNRTFSSWQKGDVLGKGSFGTVYEGFTDDGFFFAVKEASLLDEGSNQGKQSIFQLRQEISLLSRFRHENIVRYFGTQEDQSSLYIFLELVPKGSLLSLYQKYSLNDSHVSAYTWQILHGLKYLHDQNVVHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNDGYGLAADIWSLGCTVLEMLIGKPPYSDLEGMQALFRIGRGEPPPIPETLSKDARDFILECLQVNPSKRPTAAQLLEHPFLRRQFLSSFSAASPQIKSFKSL	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181620g00005	536	SMART	serkin_6	261	515	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181620g00005	536	ProSitePatterns	Protein kinases ATP-binding region signature.	267	289	IPR017441	GO:0005524
	Stsc181620g00005	536	ProSiteProfiles	Protein kinase domain profile.	261	515	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181620g00005	536	Pfam	Protein kinase domain	262	515	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181620g00005	536	MobiDBLite	consensus disorder prediction	33	48	-	-
	Stsc181620g00005	536	FunFam	Mitogen-activated protein kinase 1, putative, expressed	259	528	-	-
	Stsc181620g00005	536	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	381	393	IPR008271	GO:0004672\|GO:0006468
	Stsc181620g00005	536	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	15	525	-	-
	Stsc181620g00005	536	MobiDBLite	consensus disorder prediction	1	24	-	-
	Stsc181620g00005	536	SUPERFAMILY	Protein kinase-like (PK-like)	258	524	IPR011009	-
	Stsc181620g00005	536	MobiDBLite	consensus disorder prediction	29	48	-	-
	Stsc181620g00005	536	Gene3D	Transferase(Phosphotransferase) domain 1	259	534	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181620g00005	Stsc-Chr181620	21368	25470	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181620g00005	19	517	MAP Kinase Kinase Kinase	AT4G08500	46.114	1.12e-139	415

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Stsc181620g00005		Pkinase	2.3e-70	CL0016