Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181620g00002 ATGGACCAGTACGAGAAGGTGGAGAAGATAGGTGAGGGAACATACGGTGTCGTTTACAAGGCTCGTGACCGCGCCACCAACGAGACCATCGCCTTGAAGAAGATTCGTCTCGAGCATGAAGATGAAGGCGTTCCTAGCACCGCTATTCGAGAGATTTCTCTCTTGAAAGAAATGCAGCACAGAAACATTGTTAGGTTGCAGGATGTAGTTCACAGTGAGAAGCGATTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCATATGGATTCATCTCCAGAATTCGCAAAAGATCCACGGCAAGTAAAAGTGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGCGACTTGAAACCTCAGAATTTGTTGATAGACCGAAGCAGTAATTCTCNNNNNNNNNNAGCCAGGGCATTTGGAATTCCTGTTAGGACATTTACGCATGAGGTGGTCACACTCTGGTACAGGGCTCCGGAAATTTTGCTTGGATCTCATCATTATTCTACCCCAGTGGATGTTTGGTCCGTGGGATGCATCTTCGCAGAGATGGTAAACCAGCGACCTCTGTTCCCTGGGGACTCTGAGATTGATGAATTATTTAAAATATTCAGAATCATGGGCACACCAAATGAAGATACGTGGCCTGGAGTAACTTCATTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGCCACCTAAGGACCTTGCAACTGTGGTTCCAACTCTTGAGCCAGCTGGGCTTGATCTTCTTTCTAGTATGCTTCGCTTGGATCCCAGCAAAAGAATTACTGCTAGGAGCGCTCTTGAGCATGAATACTTCAAAGACATTAAATTAGTGCCCTGA 873 0.4433 MDQYEKVEKIGEGTYGVVYKARDRATNETIALKKIRLEHEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKVFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSSNSXXXXARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSAFPKWPPKDLATVVPTLEPAGLDLLSSMLRLDPSKRITARSALEHEYFKDIKLVP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181620g00002 290 PANTHER CELL DIVISION PROTEIN KINASE 1 283 - -
Stsc181620g00002 290 FunFam Cell division control protein 2 1 84 - -
Stsc181620g00002 290 Gene3D Transferase(Phosphotransferase) domain 1 86 288 - -
Stsc181620g00002 290 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc181620g00002 290 CDD STKc_CDK1_CdkB_like 4 283 - -
Stsc181620g00002 290 SUPERFAMILY Protein kinase-like (PK-like) 1 286 IPR011009 -
Stsc181620g00002 290 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Stsc181620g00002 290 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181620g00002 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Stsc181620g00002 290 FunFam Cell division control protein 2 homolog 86 288 - -
Stsc181620g00002 290 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181620g00002 290 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181620g00002 Stsc-Chr181620 8663 12670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181620g00002 1 290 Core Cell Cycle Gene Families AT3G48750 82.653 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Stsc181620g00002 Pkinase 1.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181620g00002 K02206 - qsa:O6P43_013208 538.11