Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181620g00001 ATGGTGGAAGAAGACCCTCCTACCATAGCAAACTTTGGTGATCCTTTCTCAAGCTTTGGAGGAGATCCCTTTCTACATGATGATATGCCCTACTTTGACACTTCATCTTGGGGACTACTGCACGAAGAAGAAGCACCTGCTGCTACTTGTACTGCCGAGGATTACGATGATGATAATCATCAGATCGATATCTCTCATGATTATTCTTCCTCGCCAATAATGGCAGCACTTAATAATAACAAGCCTCCTTCTTCTTCTGCTGTGGTGGACAACAACACAGGACCAGTAGTAGTGCAGATCTCTTCTCCTCTTAATAAGCGAAGCAGGAAAAATCAGGCAAAGAAATCGATTTGTATTCCAGCAGCAGCACCACCAAGCAATAGACAAGGTGGAGGAGAGGTAGTTCCCTCTGACCTTTGGGCTTGGAGAAAGTATGGTCAAAAACCCATTAAAGGTTCTCCCTATCCAAGGGGTTACTATAGATGCAGCAGCACAAAGGGTTGCCCTGCAAGGAAACAAGTGGAGAGGAGCAGAACAGATCCAAACATGTTGGTCATTACTTACACTTCTGAACACAACCATTCATGGCCAACTCAAAGAAACGCTTTGGCTGGTTCATCCCGATCCACTAAGAATACATCAAACCCAGAAGAACAACAACACAGCAACAGTGACAGCAACACCGCGTTACTCGCAGTCAAGAAAGAAGGCATGGATAATAATAATAATAACAAAGGTGAGGACTTGTTTGCAGAATTGGGACAAGTGGAAGGTGATTATACATGTTGA 789 0.4398 MVEEDPPTIANFGDPFSSFGGDPFLHDDMPYFDTSSWGLLHEEEAPAATCTAEDYDDDNHQIDISHDYSSSPIMAALNNNKPPSSSAVVDNNTGPVVVQISSPLNKRSRKNQAKKSICIPAAAPPSNRQGGGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRTDPNMLVITYTSEHNHSWPTQRNALAGSSRSTKNTSNPEEQQHSNSDSNTALLAVKKEGMDNNNNNKGEDLFAELGQVEGDYTC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181620g00001 262 ProSiteProfiles WRKY domain profile. 131 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00001 262 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 68 236 IPR044810 GO:0003700
Stsc181620g00001 262 SUPERFAMILY WRKY DNA-binding domain 135 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00001 262 Pfam WRKY DNA -binding domain 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00001 262 SMART WRKY_cls 136 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00001 262 FunFam probable WRKY transcription factor 14 109 190 - -
Stsc181620g00001 262 Gene3D WRKY domain 109 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181620g00001 262 MobiDBLite consensus disorder prediction 192 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181620g00001 Stsc-Chr181620 1555 3351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181620g00001 12 259 WRKY Transcription Factor Family AT2G34830 40.964 1.07e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181620g00001 WRKY 7.6e-26 CL0274