Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181617g00007 ATGTCAGTGTACGACGCAGCATTCGTAGATACACAGCTCTCAAAGCGCACTTCCATCTTCGGTCTCCGTCTATGGGTCCTCATCGGAATCCTCGTCGGCGCTCTCATTGTCTTCTCCCTCTTCCTCCTCTCCCTCTGCTTCATCTCCCGCCGCAACCGCCACCGCCGCAACCGCAACCGCAAGCCTATCACTCCTCTCGTCTCCAAGGAAATCCAAGAAATCATTCCCAATCCTCAACCGCAGGAACTCCACCTCGACATCGCAAAATCTGCGGCGGCGGAGCAGCACCGCAGGGTGGTGGCTGCTGTGGCGTTCTCAAGCGGAGAAAGCAAAGGCGGCGGAGGAGGAGGAGGTGGAGGAAGCGTGTGTGAAACGACGTCGTCGTTTGGGAGTGGAAGCATATCGGTGGGGCCAGAGGTTTCGCATCTTGGTTGGGGGAAGTGGTTTACGCTGAGAGAAATGGAGGATGCGACTGGAGGAATGTGTGAGGAGAATGTGATCGGTGAAGGTGGTTATGGAATCGTTTATCGTGGTGTTCTCTCTGATGGTACCAATGTTGCTGTTAAGAATCTCTTGAATAACAAGGGACAAGCTGAGAGAGAATTTAGGGTAGAGGTAGAAGCTATTGGTCGTGTAAGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAAGGGGCATACAGGATGCTTGTGTATGAATATGTTGACAATGGGAATCTGGACCAGTGGCTGCATGGGGATGTTGATTCTGTAAGCCCTCTGACTTGGGATATCCGCATGAACATCGTCTTGGGAACTGCGAAAGGATTGGCTTATCTTCATGAAGGACTTGAACCAAAAGTTGTCCACCGAGACGTGAAATCAAGCAATATACTCCTTGATCGCCAATGGAACCCGAAGGTTTCTGACTTTGGGCTCGCTAAGCTTCTCTGTTCTGATCATAGCTATGTCACAACCAGAGTGATGGGGACATTTGGTTATGTTGCACCGGAGTATGCATGCACTGGAATGCTGACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATTATGGAAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAAACCCCAAGGAGAGGTTAATTTAATTGAGTGGTTGAAAACTATGGTTGGCAATAGAAAATCCGAGGAAGTGATCGATCCAAAGCTTCCTGAAAAGCCATCTTCAAAGGCTCTTAAACGTGCTCTGTTGGTTGCTCTTAAATGTGTCGATCCTGATGCCACAAAGAGACCTAAGATTGGACATGTAATCCACATGCTTGAAGCTGACGACCTCCTGTTCCATGATGAACGGCGGACTGTGGGAGAATCGTCACGATCCCATCGTGATTATCATCATCATGAGCAAAAGGACTCTAATAGAGACAGAAAGCCAATAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAAAAGTAGTAAAAATCTCGATCATCCCACTAGGTTGAGATGA 1488 0.4785 MSVYDAAFVDTQLSKRTSIFGLRLWVLIGILVGALIVFSLFLLSLCFISRRNRHRRNRNRKPITPLVSKEIQEIIPNPQPQELHLDIAKSAAAEQHRRVVAAVAFSSGESKGGGGGGGGGSVCETTSSFGSGSISVGPEVSHLGWGKWFTLREMEDATGGMCEENVIGEGGYGIVYRGVLSDGTNVAVKNLLNNKGQAEREFRVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGDVDSVSPLTWDIRMNIVLGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLCSDHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSKPQGEVNLIEWLKTMVGNRKSEEVIDPKLPEKPSSKALKRALLVALKCVDPDATKRPKIGHVIHMLEADDLLFHDERRTVGESSRSHRDYHHHEQKDSNRDRKPIGGEITDQSEDDKSSKNLDHPTRLR 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181617g00007 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Stsc181617g00007 495 ProSitePatterns Protein kinases ATP-binding region signature. 167 189 IPR017441 GO:0005524
Stsc181617g00007 495 ProSiteProfiles Protein kinase domain profile. 161 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181617g00007 495 MobiDBLite consensus disorder prediction 445 495 - -
Stsc181617g00007 495 Gene3D Transferase(Phosphotransferase) domain 1 237 445 - -
Stsc181617g00007 495 SUPERFAMILY Protein kinase-like (PK-like) 135 433 IPR011009 -
Stsc181617g00007 495 FunFam Putative receptor-like serine/threonine-protein kinase 237 447 - -
Stsc181617g00007 495 FunFam Probable serine/threonine-protein kinase At1g01540 141 236 - -
Stsc181617g00007 495 CDD STKc_IRAK 167 433 - -
Stsc181617g00007 495 PANTHER OS01G0323000 PROTEIN 8 457 - -
Stsc181617g00007 495 Gene3D Phosphorylase Kinase; domain 1 136 236 - -
Stsc181617g00007 495 SMART serkin_6 161 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181617g00007 495 Pfam Protein kinase domain 164 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181617g00007 Stsc-Chr181617 42449 45035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181617g00007 26 437 Trihelix Transcription Factor Family AT5G38560 39.480 2.12e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc181617g00007 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181617g00007 - - lang:109330952 729.554