Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181617g00004 ATGGATAAAGTGAGCGATGCTTTCATGTCTGGTTTGATCACTGTTCTTCTCGAGAGGTTCCTTTCAACTGAGACTTACAACTTGGTTGTGGGAAAGAAACTTGGCCCTCAGTTGGTGAGAAGACTGAGGACTTCTCTCTTGGCTGCTGAAGCTCTTGTTGCTGATGCTGAGCAGAAGCAGTTTGGTAACAAATCTGTGAGGAAGTGGCTCCATGAACTGAGGGATGCTGTCTACAAAGCTGAAGACTTGCTGGAGCATTTGTGCATCAAAGCTGCAACTCAAAAGCAGGAACGGACTTTCTTGCTTAGCATCTTCAATTTTGAAGAAAGGCAGATGGTCAGTGAGATAGAAGAGGTGGTTAGAACTATTGAAGATCTTGAGAAATGCAAAGAAAGCCTTGGCCTTGAAAAGATTCCCACTGGAAGCTCATCATGGAGGACACCATCCAGTTCTCTTGTGAGAGGGAATGTGCATGGCAGGGAGGATGACAAGAAGGCCTTAATCAAGATGCTGAATCACAACAATGAGCATCTCTTGTCTGTGATTGCTATTGTAGGCATCGGTGGAGTTGGTAAAACAACATTAGCCCAATGGCTGTACAATGAGGAGGAGTTCATGAAGGGATTTGATCTGAAAACATGGATTTGTATTTCAGAAAAATTTAATGTTGTTGAGACCACGAGGAACGTCTTAAAGGGGATCCTTGGAGGTACTTGTAGTATCGACGATTTCAATTCACTTCAACATGCTTTGAAACAACAATTGTCCAATAAGAAGTTTTTTATTGTTCTGGATGATGTTTGGAGTGATGATGGTGACAGATGGAGCAACTTTATGACCCCTTTCCAATATGGGAAGAAGGGAAGCATTGTTCTTCTAACTACTCGCGGGGAAAATGTCGCTTTAGTGGTTCATCAGGATTGCCGCCCTTATTTTCTTAGAGGGTTATCAGAAGACTATTGTTGGTCGGTGTTTGCTGACAATGCATCTTTTCCAAAATCAAATGGGAGTGCAGCACTTGAAGAAATTGGTAGGCAGATTGTCAAGAAGTGTGATGGCTTGCCATTAGCTGCAGAGACACTTGGACGCTTGTTACGTACAAAGCATGATGTTAAGGAATGGAACAAGATTCTAATGAGTGATATTTGGGTACTTCCAGTGGAGAAGAGTAAGATTATCCCAGCATTATTGATAAGTTACTTCCATCTCCCTGCACATTTAAAGCGTTGTTTTGTTTATTGCTCTTTATATCCCAAAGATCATAACTTCAAGAAAGATGAATTAATCCTTTTGTGGATGGGAGAAGATCTTTTACCTCCACCAAAGGGAGGAGAGACTCTAGAAGAAGTTGGGTCTGAGTGCTTTGATGAACTAACTTCTAGATTATTTTTCACACACCAGCCTCGTGATTATGGTTATTATTTTTTGATGCACGATCTCTTGCATGACTTAGCGATATTCCTTGCCGGAGATTTCTATTGCAACTTGGAGGAGCTTAGTGAAGAGGAGCAGATAAGGATTCAGACCCGACACTTGCGTGTAAATTTACACGATTGTAGTTCGAAACTTCCTAATTCTATTTCTAAAGTAGAATCTCTGAGAACACTATTATTGTTTAGAAATTTGTCATCTCCCAATTGCAACATTGAAGCGGCTACATGCGAAATATTACCAAAGTGTAAATACTTGAGAGCTTTATCCCTAAAAAATCTTGATGTGTTGCCTAACTCAATAGGAGAATTGATCCATTTGCGCTACTTGGATCTCTCTGAGACTGAAATTAAGACACTGCCAGAATCTTTGCGCACCTTGTGTTGTTTGCAAACATTGAAGTTGCATGGTTGTTCTAAGCTAACTGTGCTGCCTAGTGGTTTGCATAATCTTGTGAGTTTGCACCATCTTGATATTAGGGGAACTTCTTTGGAAGAAATGCCCAAAAAAATGAGCAAACTGAATCATTTGCACATGTTAAGTTCTTTTGTTGTGGGCAAGCACGAAGACAATGGAATCCAAGAGTTAGGGGGGCTTGTAAATCTTCATGGATTACTTGAGATTAGGAAGTTGGAGAATATTGTTGACGTGAAAGAAGCAAAGGGCGCAAAGATGATGGATAAGAAGCATCTTGATAGATTATGGTTGGAATGGTCTTCAAATGATAGTATGGTTTCAAGCACACAAACAGAAAGAGACATGCTCGATAACTTGCAACCACACAATGGCTTGAAAGAGCTGAAAATCAAGGGATACAAGGGTACAATATTTCAAGAATGGTTGGGGCATCGTTCCTACAACAATATGACAAGTGTATATCTGGAGTCTTGCAAGAATTGTTGCATGCTACCTTCACTTGGACAGCTGCCATCTCTTAAGTCCCTACGCATTGTAGATTTTCCTGAGTTGAAGAGCATTGGCATGGAGTTTTACAAGAATGAAGGAGATCATCATTCTTTGCATATTGCACCTTTTCCCGCATTGGAGAGTTTGGATTTTCTTTACATGCCAAGTTGGGAGTTGTGGCACGTATCTGAATCAGAAACTTTTCCTCGACTCAGGAGGCTTGGACTAATAAGTTGTGGAATGTTAAAGGGAGAGATGCTTAATCAGGTATTCTTGAGAATCGTTTCTTCATTGGCAGATGTTTCCAAACTCTGCAAACTACATATAAGCGATTCTTATGCATATCGGGATGCTGACGTCATGTTTCTTGAAGAGGATAATACTTTATCAATTTCAGGATGTGACTCAGTGATGGAATCCGCATTTACAGCAATGAGCATGAACCATCTAAGTTGCCTCCAAGAAATAGAAATCTCAGGGTACAGGTGTGATGTATCCTTTCCGGGCAATTGTTTACCCAAATCTTTGCAAATTCTGAAAATTTGGAGGTGCAGAAAACTGGAATTCCCCCAGCAACAGCAACTGAAGCATAATTTGGTAGAGCTAACAATAGATAAAAGCTGTGATTCATTGATCTCATTGTCGTTGGATGCCTTTCCCAATCTCAAGACTCTTTCGTTAATAGAGTGTTCAAATCTGGAATCAGTTTCAATGTCAGAGCCTCATCACACTGCTCTTCAAAGTCTCTCTATCTTTGGTTGCCCCAAATTTGTGTCATTCTCAAAAGGACTGGTTGCACCCAATTTGACTCACCTCCATGTTGAAAGGTGCTCAAAGATGGAGGCATTGCCGAGTGACCTCAACAGACTTCTCCCAAATTTACAGTCTCTCTCCATAACAGGTTGCCCAAACATTTATAGTTTGCCGCCTAACCTAAAACAGCTTGGTGTGGGAGGTTGTGATAAACAAGTGAGGGGTCTATCATCCATGGCCAACTTGGACACCATCACTCATCTCATAATTGATGGAGATGGGTGTGAGAGCAGAATAAAGTCATTCCCGGAGGTTGGTTCACTCCCTCACCTTCCCTCTCTTACCACTTTGGAGATCAGTGGGTTTGATCATTTGGAGACTTTAGAGTGCAACGAGCTCCTCCATCTTACTTCCCTCCAACGACTACACATTGAATCGTGTCACAAGCTGGAGAATATGGCAGGAGAAAAGCTGCCTTCCTCTTTGTTAAAGTTTAAAATTTTTCTCTGTGATTTGTTGGAAGAAAAGTGCAAGAAGAAGCATCAACAAATTTGGCCCAAAATTGAACACATCGCCACCATTAAAGTCGGTGGCCAAAAAATTGTCTGA 3699 0.4115 MDKVSDAFMSGLITVLLERFLSTETYNLVVGKKLGPQLVRRLRTSLLAAEALVADAEQKQFGNKSVRKWLHELRDAVYKAEDLLEHLCIKAATQKQERTFLLSIFNFEERQMVSEIEEVVRTIEDLEKCKESLGLEKIPTGSSSWRTPSSSLVRGNVHGREDDKKALIKMLNHNNEHLLSVIAIVGIGGVGKTTLAQWLYNEEEFMKGFDLKTWICISEKFNVVETTRNVLKGILGGTCSIDDFNSLQHALKQQLSNKKFFIVLDDVWSDDGDRWSNFMTPFQYGKKGSIVLLTTRGENVALVVHQDCRPYFLRGLSEDYCWSVFADNASFPKSNGSAALEEIGRQIVKKCDGLPLAAETLGRLLRTKHDVKEWNKILMSDIWVLPVEKSKIIPALLISYFHLPAHLKRCFVYCSLYPKDHNFKKDELILLWMGEDLLPPPKGGETLEEVGSECFDELTSRLFFTHQPRDYGYYFLMHDLLHDLAIFLAGDFYCNLEELSEEEQIRIQTRHLRVNLHDCSSKLPNSISKVESLRTLLLFRNLSSPNCNIEAATCEILPKCKYLRALSLKNLDVLPNSIGELIHLRYLDLSETEIKTLPESLRTLCCLQTLKLHGCSKLTVLPSGLHNLVSLHHLDIRGTSLEEMPKKMSKLNHLHMLSSFVVGKHEDNGIQELGGLVNLHGLLEIRKLENIVDVKEAKGAKMMDKKHLDRLWLEWSSNDSMVSSTQTERDMLDNLQPHNGLKELKIKGYKGTIFQEWLGHRSYNNMTSVYLESCKNCCMLPSLGQLPSLKSLRIVDFPELKSIGMEFYKNEGDHHSLHIAPFPALESLDFLYMPSWELWHVSESETFPRLRRLGLISCGMLKGEMLNQVFLRIVSSLADVSKLCKLHISDSYAYRDADVMFLEEDNTLSISGCDSVMESAFTAMSMNHLSCLQEIEISGYRCDVSFPGNCLPKSLQILKIWRCRKLEFPQQQQLKHNLVELTIDKSCDSLISLSLDAFPNLKTLSLIECSNLESVSMSEPHHTALQSLSIFGCPKFVSFSKGLVAPNLTHLHVERCSKMEALPSDLNRLLPNLQSLSITGCPNIYSLPPNLKQLGVGGCDKQVRGLSSMANLDTITHLIIDGDGCESRIKSFPEVGSLPHLPSLTTLEISGFDHLETLECNELLHLTSLQRLHIESCHKLENMAGEKLPSSLLKFKIFLCDLLEEKCKKKHQQIWPKIEHIATIKVGGQKIV 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181617g00004 1232 SUPERFAMILY L domain-like 477 871 - -
Stsc181617g00004 1232 Gene3D - 315 398 IPR042197 -
Stsc181617g00004 1232 Gene3D - 148 309 IPR027417 -
Stsc181617g00004 1232 Pfam Rx N-terminal domain 37 99 IPR041118 -
Stsc181617g00004 1232 Gene3D - 399 486 IPR036388 -
Stsc181617g00004 1232 Gene3D - 10 129 - -
Stsc181617g00004 1232 Coils Coil 39 59 - -
Stsc181617g00004 1232 PANTHER DISEASE RESISTANCE PROTEIN RP 65 804 IPR044974 GO:0006952
Stsc181617g00004 1232 Gene3D Ribonuclease Inhibitor 492 696 IPR032675 -
Stsc181617g00004 1232 Gene3D Ribonuclease Inhibitor 700 868 IPR032675 -
Stsc181617g00004 1232 Gene3D Ribonuclease Inhibitor 869 1045 IPR032675 -
Stsc181617g00004 1232 Gene3D Ribonuclease Inhibitor 1046 1217 IPR032675 -
Stsc181617g00004 1232 PRINTS Disease resistance protein signature 996 1012 - -
Stsc181617g00004 1232 PRINTS Disease resistance protein signature 254 268 - -
Stsc181617g00004 1232 PRINTS Disease resistance protein signature 181 196 - -
Stsc181617g00004 1232 PRINTS Disease resistance protein signature 351 365 - -
Stsc181617g00004 1232 SUPERFAMILY L domain-like 926 1217 - -
Stsc181617g00004 1232 Pfam NB-ARC domain 160 378 IPR002182 GO:0043531
Stsc181617g00004 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 414 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181617g00004 Stsc-Chr181617 21227 25856 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181617g00004 182 368 WRKY Transcription Factor Family AT5G45050 27.461 3.04e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181617g00004 - - adu:107472750 1509.97