Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181617g00001 ATGGCTGGTGCACTTATTGGTGTAGCTTTACTTAATGGCTTCACTAAAAATATCATTGACAAGCTCCTTACAACTGATACTGTCAACCTGGTCTTGGGGAAGAAGCTTGGCCCTGACTTGGTTCAGAGGCTGACGACTTCTCTCATGGGTGCTGAAGCTCTTGTTGCTGATGCTGAGTTGAAGCAGTTCGGCAATCCACCTGTGAGGAAGTGGCTTCAGAGTCTCAGGGATGCTGTTTACCGTGCTGAGGACTTGCTGGAATCTGTCCTCATCAAAGCAGAAGCTGAAGAAAAGGTACCTTCTTTCGGGCCAAATAGATTCATCAGCAACCGAGATACGGAGATGGTAGACAAGATGGAAGGGGTGGTTAGAAGAATAGAGGACCTTAAAGAACTAAAAGATTTCCTTCGTCTTGAACAGATTTCCACTGATAGCTCATCATGGAGGATTCCTTCCGGTTCTGTTGTGAAAGGGAATGTGCATGGCAGGGAGGATGACAAGAAGGCCTTAATCAACATGCTGAATCACAACAATGAGCATCACTCGTCTGTGATTGCTATTGTTGGCATAGCTGGGGTTGGTAAAACAACTTTAGCCCAATGGCTGTTCAACAATCAGGAGGAGGAGTTCTTGAAGGGATTTGATGGCAAAGCATGGGTTTGTGTTTCAGAAAAATTTGATATTGTTGAGACTACAAGGCTCATAAAGGATAAACTTCAAATTACTTGTATTCTCAACGATATCGATTCACTTCAGTGTGCTTTGAAAGAACAATTGTCCAATAACAAGTTCTTTATTGTTTTGGATGATGTTTGGAGTTATGATGTTGATAAATGGAGTAAGTTTATGACCCCTTTCCAACAAAATGGGAAGAAGGGAAGTATTGTTCTTCTGACCGCTCGGGAGGAAAAGGTCACTTCAGCAGTTCAGAATTGTCGCTCTTTTTTTCTCAACAAGTTGTCAGAAGACGATTGTTGGTCGGTGTTGGCTGACAATGCATCTTTTCCACTATCAAATGGGAGCGCAACACTTGCAGAAATTGGTAAGAAGATTGCGAAGAAGTGCGATGGTTTGCCATTAGCTGCTGAAACACTTGGAAGCTTGTTACGCCCAAAACATGATATTGAGAAATGGAACAAGATATTAACCGATGATATTTGGGATTTTTCTTTGGAGGAGACTTATAACTTTGAGAAAGATGAGTTAATATCTTTGTGGATGGCGGAAGACCTTTTACCACCACCAAAGGCAAGAGAGACTTTAGAAGATGTTGGTTCTGAGTGTTTTGATGAGTTGACTTCCAGATCATTTTTCACAAAAATTCAAGATAAGAGTGCCTATTATTATTATTTTGTGATGCACGATCTTTTCCACGACTTAGCAATATTCCTTTCCGGAGATTTCTATTGCAACTTGGAGAAACTTGGTGAAAACGAGGAGATAAGGATTCAGACTCGACACTTGCGTGTAAATTTACATGATTGTAGCTCAAAACCTCAAAATTCTATTTCTAAACTGGAATCTTTGAGGACATTGTTGTCTAACAAATTCTCCAAGATTGAAATAGCAACATGTGACATATTGTCAAAGTGTAAATACTTGAGAGTTTTATCCTCTCACAGACTTGACATGTTGCCTAATTCAATTGGAGAATTGATCCATTTGCGCCACTTGGATCTCTCTGAGACTGAAATTGAGACATTGCCAGAATCTTTGTGCACCTTGAGCTGTTTGCAAACACTGAAGTTATATGGTTGTTATAAGTTAACTACACTGCCTATTGGTTTGTGTAATCTCGTGAGTTTGCGACATCTGGATACTAGGAGAACTTGTTTGGAAGAAATGCCTAGAAAAATGAGCAAATTGAATCAATTGCACATTTTAAGTTCCTTTGTTGTGGGCAAGCATGGAGACAATGGAATACAAGAGTTAGGAGGGCTTGTAAATCTTCATGGATCACTTGAGATTAAGAAGTTGGAGAACATTGCTGATGTGAAAGAAGCAAAGGGCGCAAAGATGATGGATAAGAAGCACCTTGATGGATTAAGGTTGGAATGGTGTTCAGGTGGTGATATGGTTTCAAGCTCACAAACAGAAAGAGACATACTGGATAACTTGCAACCGCACAATCACTTGAAGGAGTTGGCAATTGATGGATACAAGGGTACTATATTTCCAGATTGGATTGGGCATCTTTCCTACCAATACATGACAGAAGTATCTCTGGTAAGTTGCAAGAATTGCTGCATGCTGCCTTCACTTGGACAGCTGCCATATCTCAAGTCCCTAAGCATTGGAGGTCTTGATCAGCTCAAGAGAATTGGCATGGAGTTTTACAAGAGTGAAGGAGATCATCATTCTTCGCGTATTGCACCGTTTCCGTAG 2385 0.4075 MAGALIGVALLNGFTKNIIDKLLTTDTVNLVLGKKLGPDLVQRLTTSLMGAEALVADAELKQFGNPPVRKWLQSLRDAVYRAEDLLESVLIKAEAEEKVPSFGPNRFISNRDTEMVDKMEGVVRRIEDLKELKDFLRLEQISTDSSSWRIPSGSVVKGNVHGREDDKKALINMLNHNNEHHSSVIAIVGIAGVGKTTLAQWLFNNQEEEFLKGFDGKAWVCVSEKFDIVETTRLIKDKLQITCILNDIDSLQCALKEQLSNNKFFIVLDDVWSYDVDKWSKFMTPFQQNGKKGSIVLLTAREEKVTSAVQNCRSFFLNKLSEDDCWSVLADNASFPLSNGSATLAEIGKKIAKKCDGLPLAAETLGSLLRPKHDIEKWNKILTDDIWDFSLEETYNFEKDELISLWMAEDLLPPPKARETLEDVGSECFDELTSRSFFTKIQDKSAYYYYFVMHDLFHDLAIFLSGDFYCNLEKLGENEEIRIQTRHLRVNLHDCSSKPQNSISKLESLRTLLSNKFSKIEIATCDILSKCKYLRVLSSHRLDMLPNSIGELIHLRHLDLSETEIETLPESLCTLSCLQTLKLYGCYKLTTLPIGLCNLVSLRHLDTRRTCLEEMPRKMSKLNQLHILSSFVVGKHGDNGIQELGGLVNLHGSLEIKKLENIADVKEAKGAKMMDKKHLDGLRLEWCSGGDMVSSSQTERDILDNLQPHNHLKELAIDGYKGTIFPDWIGHLSYQYMTEVSLVSCKNCCMLPSLGQLPYLKSLSIGGLDQLKRIGMEFYKSEGDHHSSRIAPFP 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181617g00001 794 PRINTS Disease resistance protein signature 550 566 - -
Stsc181617g00001 794 PRINTS Disease resistance protein signature 355 369 - -
Stsc181617g00001 794 PRINTS Disease resistance protein signature 258 272 - -
Stsc181617g00001 794 PRINTS Disease resistance protein signature 184 199 - -
Stsc181617g00001 794 Gene3D Ribonuclease Inhibitor 471 783 IPR032675 -
Stsc181617g00001 794 PANTHER DISEASE RESISTANCE PROTEIN RP 69 774 IPR044974 GO:0006952
Stsc181617g00001 794 Gene3D - 144 315 IPR027417 -
Stsc181617g00001 794 SMART LRR_typ_2 552 575 IPR003591 -
Stsc181617g00001 794 SMART LRR_typ_2 599 622 IPR003591 -
Stsc181617g00001 794 SUPERFAMILY L domain-like 452 778 - -
Stsc181617g00001 794 Coils Coil 119 139 - -
Stsc181617g00001 794 Gene3D - 394 462 IPR036388 -
Stsc181617g00001 794 Gene3D - 16 134 - -
Stsc181617g00001 794 Pfam Rx N-terminal domain 39 99 IPR041118 -
Stsc181617g00001 794 Gene3D - 319 393 IPR042197 -
Stsc181617g00001 794 Pfam NB-ARC domain 163 383 IPR002182 GO:0043531
Stsc181617g00001 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 389 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181617g00001 Stsc-Chr181617 6895 9369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181617g00001 490 625 WRKY Transcription Factor Family AT4G12020 34.532 2.27e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181617g00001 - - adu:107472853 999.579