Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181613g00004 ATGGCAAATCACGGCGTAGCAACCTCAAACTATACATATGAATATGATGTTTTTCTGTGCTTTCGACGCGGAGTCCACCTAAAGTTCGTCGATCATCTCTATAAAGATTTGGAAGGCATAGATATCAAGACCTTCAAAGATGCCGACAAGGAAGAATCGCCGACGGACAAGGAAGAAACCAGTCCGGATCTCCTTGAGAAAATCGAAAGATCCAGAATAGCAGTGGTTGTTTTCTGTAAAGACTTGCCATTTTCCAGAAGGTGCCTGGACGAAGTTGCCAAGATCATGGAGTGTTATGAGAAAAAGACAATGAAGCTGGTTGTGCCACTTTTCTACCGCGGCATGACTGTTACAGATGTATGTCAGCAGGAGAAAGATACGACATATGAGAAAGCCTTTTCTCAACAGGAAGCGAGATTCGGAAAAGAATCGGAGAAGATCAAGACATGGAAATCTGCTTTGCAAAGAGTCGGTGATCTCATGAGTGGAATAAAGTGCGACAAAGAGTATGAAACTAAGATTATCAGCAAGATTGTTAAAGGCATCTCTGCTAGATTGCCTCCTTTGCGTTTACAAATCAAAGACGTATTTGGATTAGATTCTCGTTTTGATGAGGAGGTGAAATTGCTTCTAGATATAGGCAACAATGACGCAGTTCACATTCTAGCAATTTATGGACCTCCTGGCATTGGCAAAACCACATTTGCTGCGCATGTTTTTAACAAAATTATTAGCAACGACGACCAATATGCAGCTGCAATTTTTATTTCCAATATCAGAGATAAACCAATATTCGAAGATCTCCAGTCGACATTGTTGTTAGATGAGATGGGTGAAGAGAGAAAAAGCAGAGAGGGCGATACAAATGAAGGAGGTAGTGAAATCAAAGACAAACTTGGTGGTAAAAAGGTTCTTTTAGTATTGGATAATGTTCATAAGATAGAACAGTTGGAATCGCTGGCCGGCGATTGCAATTGGTTTGGTCCTGGTAGTAGGATTATTATAACAACAAAGGACGAAACTTTACTGGAAGGATGCAGTGTTGAAATTAAGAGATATCAAATGAGGGAGTTAAATCATGACGAATCTCTCAAACTCTTTTGCTGGTATGCATTCGGCAAGAGCCAACCAGCAAAAAATTTTGCAGATTTTACTACTCAAGCACTTAGTATAGCAAAGGGCTCTCCTTTGGCCTTAAAAGCACTGGGCACAAGATTGAAGGACTATAGCTTAGAGGAGTGGGAAATGGAGTTGGACAAATATAACAAGGTTCCAGGAGCCTTCGAATTTCTGCTGAAATCTTTTGGAGTACATTAA 1317 0.4047 MANHGVATSNYTYEYDVFLCFRRGVHLKFVDHLYKDLEGIDIKTFKDADKEESPTDKEETSPDLLEKIERSRIAVVVFCKDLPFSRRCLDEVAKIMECYEKKTMKLVVPLFYRGMTVTDVCQQEKDTTYEKAFSQQEARFGKESEKIKTWKSALQRVGDLMSGIKCDKEYETKIISKIVKGISARLPPLRLQIKDVFGLDSRFDEEVKLLLDIGNNDAVHILAIYGPPGIGKTTFAAHVFNKIISNDDQYAAAIFISNIRDKPIFEDLQSTLLLDEMGEERKSREGDTNEGGSEIKDKLGGKKVLLVLDNVHKIEQLESLAGDCNWFGPGSRIIITTKDETLLEGCSVEIKRYQMRELNHDESLKLFCWYAFGKSQPAKNFADFTTQALSIAKGSPLALKALGTRLKDYSLEEWEMELDKYNKVPGAFEFLLKSFGVH 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181613g00004 438 PRINTS Disease resistance protein signature 221 236 - -
Stsc181613g00004 438 PRINTS Disease resistance protein signature 298 312 - -
Stsc181613g00004 438 PRINTS Disease resistance protein signature 392 406 - -
Stsc181613g00004 438 Gene3D - 9 188 IPR035897 -
Stsc181613g00004 438 Pfam NB-ARC domain 214 420 IPR002182 GO:0043531
Stsc181613g00004 438 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 431 IPR044974 GO:0006952
Stsc181613g00004 438 Gene3D - 189 352 IPR027417 -
Stsc181613g00004 438 Gene3D - 357 431 IPR042197 -
Stsc181613g00004 438 ProSiteProfiles TIR domain profile. 13 186 IPR000157 GO:0007165
Stsc181613g00004 438 SMART till_3 14 160 IPR000157 GO:0007165
Stsc181613g00004 438 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Stsc181613g00004 438 Pfam TIR domain 15 187 IPR000157 GO:0007165
Stsc181613g00004 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 424 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181613g00004 Stsc-Chr181613 20002 22911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181613g00004 219 406 WRKY Transcription Factor Family AT5G45050 33.333 2.48e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181613g00004 - - adu:107462955 593.578