Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181613g00001 ATGGCTGCAGCTGAAGAACAAGCTCGTTGCTACTATTCGAATGAACCAGAGTTTATCAAGAATATTGTTAGAGACACTGCTGGTAGATTACCGTTGCCTGAGCCAATTGATTATGAAGTTGGACTGGATACTCGTTGTGAAGAAGTAAAATCATTGCTAGATATTGAATCTCATGACAATGTTTGCTTGTTGGGAATTTATGGAGCTGGTGGAATAGGCAAAACTAAATTGGCCAGATGTCTATTCGACAAGATCAATCTGCAGTTTGAAGCTTCATGTTTTCTTGGTAAAGTCAAAGAAAAATCTGAAAGTCTTGAAGGGTTAGAAAGTCTGCAAAAGACACTTTTAGATGACATGGGTGAGGAGACAATAACTCAGCTTGGCAGTGAATTCAAGGGGGGAAATGAAATCAAACGCAGGCTTCGCCACAAAAGAGTACTTCTAGTTCTTGATGACGTGAATTCAATACCACAATTGGAATCACTTGCTGGAGGGCATGATTGGTTTGGCTCGGGTAGCAGAATCATCATAACAACAAGGGATACTGATGTGGTAGAGAAGCATATGATGGGAGATGTTGTCAAAAATAATTATGAGGTGCAGGTGTTAAACAATGATGATTCCCTGCAACTATTTTCTTTGCATGCTTTCCATAGAAATGAGCCTGCAACGGGCTTTGAAAATGTTTCAAGAAGAGCAATAAGTTATGCAAAGGGCTTTCCATTGGCTTTAGAAGTAATAGGCTCCAATTTAGGAGGTATTACAAGTGTTGATGGCTGGAAAGAGGAACTGGACAAGTATAGCATTGATCCAAGCATTCAAGAAGTGATTGAAAGAAGCTACAATAGCTTGTATGAACTTGACCAGAAAACTTTCTTGGACATTGCTTGTTTCTTCAAAGGAGAGAAACAGGAGTATGTTAAAAGGGTATTGAAAGCTTGTGATTTCTATCCGGTTGTGCGATTGTTCATTAGTAAATGTCTCATCTCTTTAAATCGAAATGACTGCTTGGATATGCATGATCTAGTGCAAGACATGGGCAAGGAGATTATAATGAAAGAACCGTCAACAAACCCAGGTGAACGCAGTAGATTATGGTCTCATAATGACATTCTTCAAGTGCTCAAAGATGGCACGGGAAGTAGTACAATTGAAGGCATAATGCTTCATCCTTCTACACTTGAAGAAGTAAACTATGAGATTAATAATGCCTTCGATGAGATGAAGAACCTTAGAATTCTAATTGTTCGGAATACGAAATTTTCAACAGGACCAAGCCATCTTCCAAATAGTTTACGATTACTAGAGTGGAAAGGGTATCCATCAGAGTCATTCCCACTAGATTTTCATCCCCAAAGAATTGTTGACCTCAAGCTACCTCACAGTGCTCTTAAAATGGAAAGGTCATTTCAGGTATTTGAGGATTTGACATTTATCAATCTCTCCCAATGTCAATTCATTACTCAAGTTCCAAATATGTCTGGAGCTAAAAGCCTGAGAGTTCTCACCCTTGACAAATGCAATAAGCTGGAAGGATTTGATGGATCCATTGGATTTATGCCAAACCTTGTCTATTTGAGTGCTTCACAGTGCACTAAGCTCAAAAGTTTCGTGCCAGAAATGTATTTGCCGTCTCTCAAAGTGCTTTCGTTTTACTTTTGCAAAAGCCTCCAAAGCTTCCCAGAAATCAAGCAAGAGATGGACAAACCATTAAAGATTAACTTGGTAAATTCTGCAATTGAGGAGTTCCCAGATTCCGTTGGTAATCTTACAGGGCTTGAGCATATAGACATCTCTAACTCTAAAAGACTCCGGTATCTACCAAGTAGCTTCTTGAAATTGCCAAAACTTTTCACACTGACAATAGAAGGATGTTCTGTGCTTGGAAAATCATTTCAAAGGTTTAAAGGACACAGCAGTCCAAATATAAGGAGACTGAATTTTAGTGATGCTAATCTATCTGATGAAGATTTTCATCCAATTATTCAGGTTCTTCAAAATCTGGAAGACATCAATGTATCACACAATGATTTCACATCCTTTCCGAATTGCATTAAAGGATCTTTACACATAAAAAGTATTGATGTGAGCTATTGTAAAAGTCTTAAGGTAATTCCAGAACTGCCATCAAGCATTCAAAAATTAGATGCAAGATATTGCCTATCCTTGTCTTCAAAGTCCTCAACCATGCTATTGTCCAAGATTTTACAAGAGACTCAAAGACTTGAAGTTGTGATGCCAAAAATGAAGATACGCAGTTTGTTTGACTACAATTGCAAAAAAGATAATCCACTGTTCTGGGTACGGCGAAAGTTCCCAGTTATTGCTTTAGCATTGACGTTTGGGAGAGCCACTGGCAAAGATATTGATAAGACATTGATGGAGTCTCTAGAATACTGGCCCCAGGGTGATTCATTAAAATCCTACACTGTTGGTCTCAACTTGTTTATAGGAGGCCAACAAATATTTCGGAAAGGGTCCAAATATTTCAATGTAGGGGAAGACCATGTGTTAATATGTGATCTCCGGGCTTTGTTTAATGATGAAGAGTGGCATGATCTTGATGCATATGTTGGAGATGATTGGAAAGCCATTCATGTTGTATGTGAATCAACCTTAACTCTGAATCATTGGGGAGTTCATGTTTACAAGAGAGAGACAAACATGGATGATATTTCCTTCAAACATCATCCCAACTTCAAATTGTCAACTGAATTGGTTCCAGAAAGAAGTCCAGAAGAATTTCAGCAAAGAATTAGACAAGTGGTAGATAATTTGCATCCAACTGAAACATTTGGCAATAAGTATTTGCCTCTTGCTGGTCTGGAAGAAAATCCATGTTTTTCAAAGGCATTGGTGAGGTCTCACAGGATGGCTAAGGCTAACGAAGCTTCTTCGTCTTCTAACTATGGTGCGAGTTTGAGGAAAGATTCCGAAGAATCTAATTGGGACGTGTTGAAGTTATTAGAGTTGATGAAGGAATGTGTGCCGAAAGATATTGCCAGTTCATACGATGCTCAAACTCTAAAGAAATTTGCAGAAGAATTTTTTGAGGCACGTGCGCAATTTACGATGGAGAAAGGCTGCAACACTTTGAAACTTGGCTTCCCGATTGTTTTAGAAAAACACCATAAGTTTTCACCTCCAACATATCGTTACTTGGGAAGACTAGATTTAAAAGATGCAGATGATCCATTATTCAAAGCAGTGTTGAAGAGGGTGTTGCAACAACGATGGAGAACTGAAAACCTCATCAAAGGATACATGTACAAGAAGCTTTATCCTGTTGTTCTATTGAATTTGAAACGCCAGCGTCCATCCTTATGGGACCAATTGTCACAGAAGGAACAATTCGAGAATGATCCTGTGTTGGAAGAATTGTTAAGAACGATAGAGAAAGATGCCATGGAGAGTAATAAATCATATGGTGATTTGAAGGCATCTATTACTTATATTAATGCAAGAGAAATGGTTTCTGATGAATATTTGCTGGAAGCAGTGCATATGAGAGCATATGAGAATATGGAAGATGGAGTGCTGTCAGAGTGGGGTAAGGCAGAATTGGAATTATTAGAAAAGGCCAAAATAAGAATGGGAGAATCCATTACTGGAGCTAGTACTAAGATGACATCTTATGGGACAATAAGATTGGCACAAGAAGATGAAAACACTCATGATAAGCTTTGGTGGCGCCAGATTGCAAGTATGCAATTTGGAAGTTCAATTGCTAACGTGGCGGTTGGAGAGTGA 3750 0.3861 MAAAEEQARCYYSNEPEFIKNIVRDTAGRLPLPEPIDYEVGLDTRCEEVKSLLDIESHDNVCLLGIYGAGGIGKTKLARCLFDKINLQFEASCFLGKVKEKSESLEGLESLQKTLLDDMGEETITQLGSEFKGGNEIKRRLRHKRVLLVLDDVNSIPQLESLAGGHDWFGSGSRIIITTRDTDVVEKHMMGDVVKNNYEVQVLNNDDSLQLFSLHAFHRNEPATGFENVSRRAISYAKGFPLALEVIGSNLGGITSVDGWKEELDKYSIDPSIQEVIERSYNSLYELDQKTFLDIACFFKGEKQEYVKRVLKACDFYPVVRLFISKCLISLNRNDCLDMHDLVQDMGKEIIMKEPSTNPGERSRLWSHNDILQVLKDGTGSSTIEGIMLHPSTLEEVNYEINNAFDEMKNLRILIVRNTKFSTGPSHLPNSLRLLEWKGYPSESFPLDFHPQRIVDLKLPHSALKMERSFQVFEDLTFINLSQCQFITQVPNMSGAKSLRVLTLDKCNKLEGFDGSIGFMPNLVYLSASQCTKLKSFVPEMYLPSLKVLSFYFCKSLQSFPEIKQEMDKPLKINLVNSAIEEFPDSVGNLTGLEHIDISNSKRLRYLPSSFLKLPKLFTLTIEGCSVLGKSFQRFKGHSSPNIRRLNFSDANLSDEDFHPIIQVLQNLEDINVSHNDFTSFPNCIKGSLHIKSIDVSYCKSLKVIPELPSSIQKLDARYCLSLSSKSSTMLLSKILQETQRLEVVMPKMKIRSLFDYNCKKDNPLFWVRRKFPVIALALTFGRATGKDIDKTLMESLEYWPQGDSLKSYTVGLNLFIGGQQIFRKGSKYFNVGEDHVLICDLRALFNDEEWHDLDAYVGDDWKAIHVVCESTLTLNHWGVHVYKRETNMDDISFKHHPNFKLSTELVPERSPEEFQQRIRQVVDNLHPTETFGNKYLPLAGLEENPCFSKALVRSHRMAKANEASSSSNYGASLRKDSEESNWDVLKLLELMKECVPKDIASSYDAQTLKKFAEEFFEARAQFTMEKGCNTLKLGFPIVLEKHHKFSPPTYRYLGRLDLKDADDPLFKAVLKRVLQQRWRTENLIKGYMYKKLYPVVLLNLKRQRPSLWDQLSQKEQFENDPVLEELLRTIEKDAMESNKSYGDLKASITYINAREMVSDEYLLEAVHMRAYENMEDGVLSEWGKAELELLEKAKIRMGESITGASTKMTSYGTIRLAQEDENTHDKLWWRQIASMQFGSSIANVAVGE 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181613g00001 1249 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 562 IPR044974 GO:0006952
Stsc181613g00001 1249 Gene3D - 202 285 IPR042197 -
Stsc181613g00001 1249 Gene3D Ribonuclease Inhibitor 570 749 IPR032675 -
Stsc181613g00001 1249 Gene3D Ribonuclease Inhibitor 389 569 IPR032675 -
Stsc181613g00001 1249 PRINTS Disease resistance protein signature 140 154 - -
Stsc181613g00001 1249 PRINTS Disease resistance protein signature 588 604 - -
Stsc181613g00001 1249 PRINTS Disease resistance protein signature 237 251 - -
Stsc181613g00001 1249 PRINTS Disease resistance protein signature 63 78 - -
Stsc181613g00001 1249 Gene3D - 19 192 IPR027417 -
Stsc181613g00001 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 295 IPR027417 -
Stsc181613g00001 1249 SUPERFAMILY L domain-like 397 729 - -
Stsc181613g00001 1249 Pfam NB-ARC domain 45 285 IPR002182 GO:0043531
Stsc181613g00001 1249 SUPERFAMILY "Winged helix" DNA-binding domain 272 376 IPR036390 -
Stsc181613g00001 1249 Coils Coil 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181613g00001 Stsc-Chr181613 1970 7157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181613g00001 14 655 WRKY Transcription Factor Family AT4G12020 32.239 5.88e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181613g00001 - - aip:107611494 1817.36