Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181606g00006 ATGGAAGTCAAACTCACCGATTCGGCGATTATGAAGATGTGCGAGGATTCCAGTGCGGCTGAGACTCTGAAGCCGACTTTGCAAGTCATGGACTTGAAGCATGTGCAGTCGAATCAGTGCAATACCGAGAGGTTCCGTTTGATTCTCTCTGATGGGTTACATTTCCAGCAAGGCATGCTCGCCACCCAGAAGAACGATTTGATCCATTCTGGCAAGTTGCAGAAAAGTTCTATCATCGTTCTCCATCAGTACACATGCAGCATTGTACAGGGCCGAACAATCATTATTATCATTGAGCTAGAAATTCTGATGGAAACATGTGAGTTTATTGGAAAACCGGTCAGTTATGCAAAAAGCACTCCGTCGCAATCTGCAACTGCAACTGATCAATCAGGAATTACCTCTGGGCATAATGTGCTTGGTCCATCTCCTGATCCCCCAAAAGTAAATCAACCTGCTAGTAGTGTTGGTTCTGGTAGTTTTGACTCGGGGAGATTTGGTGCATCAAATGCTCCTCCTGCTTATCCTAAAGCAGAGCCTAGAGCCATGGGACCTAGTTCTGACTCGGCTAGTAATGGTTCATTAAATGTTCCTTTTACTTATCCTAAATCAGAGCCTGGAGCTACATTACCTAGATCAGGACAGCCTGCTGGGTCATATGGTGATCAGAATGCAGGTTATCGCAATGCCCAATCTGAGGCATCAAGGCCTGTTCAAAATTCTTATGCCCGTCCACCTCAGCCCATGTATCGACAGCCATCTCCAGTGTACAATAACAGAGGCCCTACTGCAAGAAATGAAGCTCACCTTAGGATCGTTCCAATAGCTGCATTGAATCCATACCAGGGTAACTGGACTATTAAAGCTAGAGTAACAGCTAAGGGAGATCTCAGGCACTATAGTAATGCCCGAGGTGATGGGAAGGTTTTTTCTTTTGATCTTCTTGATGCTGACGGTGGAGAAATCAAAGCAACTTGCTTTAATGCTGTGGCTGATCAGTTTTACAATATAATTGAAGCTGGTAATGTCTATCTGGTTTCCAGGGGAAGTATAAAGCCAGCAATAAAGACCTTCAATCACCTTCGTAATGATCAGGAGCTCACCCTTGATATGACCACCACTATACAACCAAGCCATGATGATATGTCAATTCCACAGCAAACATTTAACTTTCGTCCAATTATTGATGTTGAAAATGTTGAAAATAATACTATCTTAGATGTGATTGGTGTGGTGTCTTCTATCAGTCCTACTGCTTCAATTATGAGGAAAAATGGCACTGAAACTCAAAAGAGAAGCCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACCATGTGGGGAAACTTTTGCAATGCAGAAGGACAGAGGTTACAAAGTCTCTGTGATGCTGGAAGATTTCCAGTTTTGGCTGCCAAAGCTGTCAGAGTAAACGATTTCAATGGGAAGTCAGTTGGGACCATAGCCACTAGCCAGCTATTTGTAGAACCTGATTTTGCGGATGCTCGTAAGCTGAGGGAATGGTTTGACAAGGAGGGGAGGAACGTTCCTACTATATCTCTTTCCAGAGAAGCATCCAATTTTGCGAAGTCTGATGTGCGGAAGACCATATCCCAGATTAAAGATGAGAAATTAGGGACATCTGAGAAGCCTGATTGGATATCTGTTTGTGCAAGTGTTTCATACATGAAGGTTGATAATTTCTGCTACACAGCTTGCCCTATCTTGATAGGGGACAGGCAATGCAACAAAAAGGTGACTAATAATGGAGATGGGAGATGGCGATGTGACAGGTGTGATCAGACTGTTGATAATTGTGATTATAGGTACCTTCTGCAATTCCAGATTCAGGATCACACTGGCTTGACTTGGGTTACTGCTTTTCAGGAGAGTGGTGCCGATATCATGGGTATGTCTGCTAAAGAATTGTATGACCTTAAATTTGAAAAAATGGATGATGAAAAATTTGGAGAAGTCATGCGTAAGGTCCTCTTTAGTAAGTATATATTCAAGTTGAAAGTAAAGGAGGAAACATACAGTGATGAGCAGCGTGTTAAGTCGACAGTAGTAAAAGCAGAGAAGGTAAGCTTTCCATCTGAATCTAAATATCTTCTAGATGCAATTGATAAGCTTAAGTCTGAGAATGGAGAAGGTACCAATCCTAATATTGCTGGACCGGTGAACACTGGAACTGGACAAGCTATGCCACCTCCAGTTTTCAATCCTGTGATGAGCAACTGTAATTCTGGTATTGATTATGGAAACCAATATAGCAGCTCTTTTGCTGCTTCAACTGGTGCTCCTGCTCCTGCTTCATATGTATCATGTAGCATCTGTGGTGGCTCTGGTCACAGCTCTGCACAATGCCCTAATAATATGATGAATATGCCATCTCAGTCGGCCGCAAGAGGTGGTGGATTCACAAACAGGGCATCTGGTGGATCAGCAGCTGCCTCTGGCGAATGCTTTAAATGCCATCAGCCTGGCCATTGGGCAAGAGATTGCCCTGCTTACAGTGCAGCACCACCAGCTTATGGAAGCTCTAATGGAATGCAAGAATCTAGCATCAGAATCGAGTATACCGAAACCGTTTCAAACAAAAAATTGGAACCGGTTAGGTGTAGGTGGATACGCGAACTCCGCAAAAACGAAACAGTACTTAGAAGTAAAGGCACGTGCTATTTACTGGCTAACCAGGTTGGCTGTTGCCTCCTCTCTAAAGCCCGTGGCCTCCTTACGCACGTGCTCGTGGTAGCCACACATCGCAGTTCTCTCGACAAGAGGAAGTTGTTGTTTCAACAAAGAGAGGAAATGGAATTTTTTGTAAACGGAATGAATGGGATTGGTGATGAATCTGAGTGCCCCTTTGATTCAATGGACATCCAAAGGTGCCCATTCTTGAGGAACATCAACAAACCTACAAACTTCTCTTTCTCTTCAGCATATATGTCCATTCCTGTCCATGGAAGAAAGGGTCCTATATTTGAAGATGGTCCTAGTTTTGACACGGCATTTAAGCTCTTTCATGGGAAAGATGGAGTTGTTCCCCTCTTTGAGAGATCTGACTGTAACAATGGCTGTAGGGAAGCCGATTCTCTGCCTGTTTTTAACCCGTTAGCTGGAAAAGCTGCTACCATAAGTCTATCAGCATTTGGAAATGGTGGCCTATTTAATTTTGGGAATTTTTCTGAGAAATGGAAGAAGCAAAAGTCAGAATCATCAAAGAAAAAGGAACACTCGTCCCAGGAAGGAAATGCATCAAAGCATGAGGCGCTTGGAAATGAATGGTTAGCAAATGGAAATTGCCCTATAGCCAAGTCTTATAGAGCTGTAAGCAATGTTCTCCCACTTGTTGCTACGGCTTTTCGGCCACCACCTGGAATAAAGATTAAATGCCCACCTGCTGTTGTTGCTGCAAGAGCTGCACTTGCTCGTACCGCATTTGTGAAAAACCTGCGCCCTCAGCCCCTTCCTGCAAAAATGCTTTGTATTGCAGCGATGGGCATGGCACTTAATGTGCCCTTGGGCATGTGGAAGGAACACACCAAGAAATTCTCGCTGTCTTGGTTTGCAGCCGTGCATGCTGCTGTTCCCTTTATAGCCATGCTTCGGAAATCAGTAGTGATGCCTAAATCAGCAATGGCATTGACCATTGCAGCTTCTATCCTTGGCCAGGTCATTGGCTCAAGAGCTGAGCGTATCCGGCTGAAAGCAGCAGCAGTGGCTGAGACTCAAAAAGTGGCAGCAGAGACGGCAAGCAGCGTGGCCAACTATAATCCCATGCAGATTGGTGATATTAGGGCTGGTTACTGTGGTCCAGAGGGCATGGTTCTCAAGACTCTTCCTGGAAAGGAAACCGGTTCAACTTCAACTGCCAATGTGTGTTATTAA 3897 0.4429 MEVKLTDSAIMKMCEDSSAAETLKPTLQVMDLKHVQSNQCNTERFRLILSDGLHFQQGMLATQKNDLIHSGKLQKSSIIVLHQYTCSIVQGRTIIIIIELEILMETCEFIGKPVSYAKSTPSQSATATDQSGITSGHNVLGPSPDPPKVNQPASSVGSGSFDSGRFGASNAPPAYPKAEPRAMGPSSDSASNGSLNVPFTYPKSEPGATLPRSGQPAGSYGDQNAGYRNAQSEASRPVQNSYARPPQPMYRQPSPVYNNRGPTARNEAHLRIVPIAALNPYQGNWTIKARVTAKGDLRHYSNARGDGKVFSFDLLDADGGEIKATCFNAVADQFYNIIEAGNVYLVSRGSIKPAIKTFNHLRNDQELTLDMTTTIQPSHDDMSIPQQTFNFRPIIDVENVENNTILDVIGVVSSISPTASIMRKNGTETQKRSLQLKDMSGRSVELTMWGNFCNAEGQRLQSLCDAGRFPVLAAKAVRVNDFNGKSVGTIATSQLFVEPDFADARKLREWFDKEGRNVPTISLSREASNFAKSDVRKTISQIKDEKLGTSEKPDWISVCASVSYMKVDNFCYTACPILIGDRQCNKKVTNNGDGRWRCDRCDQTVDNCDYRYLLQFQIQDHTGLTWVTAFQESGADIMGMSAKELYDLKFEKMDDEKFGEVMRKVLFSKYIFKLKVKEETYSDEQRVKSTVVKAEKVSFPSESKYLLDAIDKLKSENGEGTNPNIAGPVNTGTGQAMPPPVFNPVMSNCNSGIDYGNQYSSSFAASTGAPAPASYVSCSICGGSGHSSAQCPNNMMNMPSQSAARGGGFTNRASGGSAAASGECFKCHQPGHWARDCPAYSAAPPAYGSSNGMQESSIRIEYTETVSNKKLEPVRCRWIRELRKNETVLRSKGTCYLLANQVGCCLLSKARGLLTHVLVVATHRSSLDKRKLLFQQREEMEFFVNGMNGIGDESECPFDSMDIQRCPFLRNINKPTNFSFSSAYMSIPVHGRKGPIFEDGPSFDTAFKLFHGKDGVVPLFERSDCNNGCREADSLPVFNPLAGKAATISLSAFGNGGLFNFGNFSEKWKKQKSESSKKKEHSSQEGNASKHEALGNEWLANGNCPIAKSYRAVSNVLPLVATAFRPPPGIKIKCPPAVVAARAALARTAFVKNLRPQPLPAKMLCIAAMGMALNVPLGMWKEHTKKFSLSWFAAVHAAVPFIAMLRKSVVMPKSAMALTIAASILGQVIGSRAERIRLKAAAVAETQKVAAETASSVANYNPMQIGDIRAGYCGPEGMVLKTLPGKETGSTSTANVCY 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181606g00006 1298 MobiDBLite consensus disorder prediction 118 260 - -
Stsc181606g00006 1298 Gene3D - 270 381 IPR012340 -
Stsc181606g00006 1298 NCBIfam replication factor-a protein 1 (rpa1) 233 712 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc181606g00006 1298 Gene3D - 522 713 IPR012340 -
Stsc181606g00006 1298 Gene3D - 3 118 IPR012340 -
Stsc181606g00006 1298 ProSiteProfiles Zinc finger CCHC-type profile. 824 838 IPR001878 GO:0003676|GO:0008270
Stsc181606g00006 1298 CDD RPA1N 9 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc181606g00006 1298 MobiDBLite consensus disorder prediction 185 199 - -
Stsc181606g00006 1298 CDD RPA1_DBD_C 539 712 IPR047192 -
Stsc181606g00006 1298 Pfam Replication protein A OB domain 394 497 IPR031657 -
Stsc181606g00006 1298 Pfam Zinc knuckle 823 838 IPR001878 GO:0003676|GO:0008270
Stsc181606g00006 1298 ProSiteProfiles Zinc finger CCHC-type profile. 778 793 IPR001878 GO:0003676|GO:0008270
Stsc181606g00006 1298 SUPERFAMILY Nucleic acid-binding proteins 271 383 IPR012340 -
Stsc181606g00006 1298 MobiDBLite consensus disorder prediction 1070 1087 - -
Stsc181606g00006 1298 Pfam OB-fold nucleic acid binding domain 285 354 IPR004365 GO:0003676
Stsc181606g00006 1298 FunFam Replication protein A subunit 383 521 - -
Stsc181606g00006 1298 CDD RPA1_DBD_A 274 377 - -
Stsc181606g00006 1298 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc181606g00006 1298 MobiDBLite consensus disorder prediction 1070 1091 - -
Stsc181606g00006 1298 MobiDBLite consensus disorder prediction 216 260 - -
Stsc181606g00006 1298 SUPERFAMILY Nucleic acid-binding proteins 536 713 IPR012340 -
Stsc181606g00006 1298 PANTHER PROTEIN, PUTATIVE-RELATED 940 1290 - -
Stsc181606g00006 1298 FunFam Replication protein A subunit 4 117 - -
Stsc181606g00006 1298 SUPERFAMILY Nucleic acid-binding proteins 389 518 IPR012340 -
Stsc181606g00006 1298 FunFam Replication protein A subunit 522 713 - -
Stsc181606g00006 1298 SMART c2hcfinal6 777 793 IPR001878 GO:0003676|GO:0008270
Stsc181606g00006 1298 SMART c2hcfinal6 823 839 IPR001878 GO:0003676|GO:0008270
Stsc181606g00006 1298 CDD RPA1_DBD_B 405 512 - -
Stsc181606g00006 1298 MobiDBLite consensus disorder prediction 118 138 - -
Stsc181606g00006 1298 MobiDBLite consensus disorder prediction 150 165 - -
Stsc181606g00006 1298 FunFam Replication protein A subunit 271 380 - -
Stsc181606g00006 1298 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Stsc181606g00006 1298 Gene3D - 769 841 - -
Stsc181606g00006 1298 Pfam Replication factor-A C terminal domain 555 706 IPR013955 -
Stsc181606g00006 1298 SUPERFAMILY Retrovirus zinc finger-like domains 805 842 IPR036875 GO:0003676|GO:0008270
Stsc181606g00006 1298 Gene3D - 382 521 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181606g00006 Stsc-Chr181606 33372 40605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181606g00006 1 815 Core DNA Replication Machinery Family AT5G45400 50.230 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181606g00006 K07466 - qsa:O6P43_033421 1072.77