Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181604g00002 ATGTTTCCTTCTACTACATACAGTTACAGTACCGGCCCTTACCCTTGCTTCCCTTCATCTTCTTCCTATCCTCTTTTTCCTTTTCTCAACCCTGAGAACAATGCTTCTTCTTCTTCTGCAACAACCACCACAGCTAACAATAATAACAATAATCTCCTTCATGATCCATCACTTTGTGTTCCTTACATTCCAATCCCGGACACGCTGACCAATTTGGCAACCGTTGTAGATAACACCAATAATCTTGCTTCATCGTCGATGGCTAAACAACAAGAACTCACTGGCGGCGGTGGAGGTGGTGGTGGCGGTCATCACTATGGCATATCCTGCTTGCTGGCGAAGAAGCCGGTGGCGGCGCCGAAGAAAGATAGGCACAGCAAGATTTACACGGCTCAGGGGCTGAGGGACCGGAGGGTGAGGCTGTCGATCGAGATCGCGCGGAAGTTCTTCGATCTCCAGGACATGCTAGGGTTTGATAAGGCCAGCAACACGCTCGACTGGCTCTTCACCAAGTCCAAGAAAGCCATTAAAGAGCTTGCAAGGAGCAAGAACAACAACCACAGCGCCAGTGACGAACCCGGTGCCTTCGCCGCCAATAACAAGAGTTTCGCCTCATCCTCAGACTGCGACGAAGAAGAAGAAGATGACTTTGAAGTTCTTTCTCAAAACAACAGGCACCACCGCCACCAAGGGTTGAAAGGCAAGGAGAGGAAGATGAAAAGTGCAGAGAAGGAAGGTAGTGGGTGTAATGTGAGGGCAAAGATAAAGGAATCAAGGGAGAAAGCAAGAGCAAGAGCAAGAGAAAGGACAAGTAACAAGATGTGCAACACCATAATTGGAAACTCTTCTTTTAATTCTTCTGCTGGGAAGGTTCTAGAATTAAAGAAAAAATGCCCTGCACCTACTGAAAACCCTCATCATCAATTGCTTCATCACCTTGGTGGTGGTGGTGGTGAAGTAACACAAACTAGTAGAGATGATTTTAATGTTATTGAGGAATCCATTGTTATCAAGAGGAAGCTGAAGCAGCCATCTATGATGTCGTCGTCATCTTCGCATCACCATCACCATCATCACCACCACCAATTAAACCTTCCAATCCCTAATAATAAGGAAGCAAGTTTCAACAACAACAATAGTGATAATAATTACCACCCAGCTGCACCAAACTACACCAATTTGTCACCAAATTGGGATAATAATGCTGCTAATAATAATAATAATAATAATAATAACCGTTCCAACTTCTGTGCAATAGCCAGCATGAATCTATCTACAGGGCTACAAATCTTTGGAAAGTCATGGGAAGAATGCACAAATCCACGTCTACACTAG 1335 0.4479 MFPSTTYSYSTGPYPCFPSSSSYPLFPFLNPENNASSSSATTTTANNNNNNLLHDPSLCVPYIPIPDTLTNLATVVDNTNNLASSSMAKQQELTGGGGGGGGGHHYGISCLLAKKPVAAPKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSKNNNHSASDEPGAFAANNKSFASSSDCDEEEEDDFEVLSQNNRHHRHQGLKGKERKMKSAEKEGSGCNVRAKIKESREKARARARERTSNKMCNTIIGNSSFNSSAGKVLELKKKCPAPTENPHHQLLHHLGGGGGEVTQTSRDDFNVIEESIVIKRKLKQPSMMSSSSSHHHHHHHHHQLNLPIPNNKEASFNNNNSDNNYHPAAPNYTNLSPNWDNNAANNNNNNNNNRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181604g00002 444 MobiDBLite consensus disorder prediction 341 409 - -
Stsc181604g00002 444 MobiDBLite consensus disorder prediction 186 205 - -
Stsc181604g00002 444 Pfam TCP family transcription factor 120 276 IPR017887 -
Stsc181604g00002 444 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 396 IPR005333 GO:0003700
Stsc181604g00002 444 MobiDBLite consensus disorder prediction 183 249 - -
Stsc181604g00002 444 MobiDBLite consensus disorder prediction 367 409 - -
Stsc181604g00002 444 ProSiteProfiles R domain profile. 256 273 IPR017888 -
Stsc181604g00002 444 ProSiteProfiles TCP domain profile. 121 179 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181604g00002 Stsc-Chr181604 14302 15996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181604g00002 112 275 TCP Transcription Factor Family AT1G67260 42.373 4.28e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc181604g00002 TCP 3.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181604g00002 - - cam:101499957 322.783