Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181602g00003 ATGCTATCTACAAGAGGCTCTGTTGCATCCCTTCTTCACGGTTCCAAGAGAAGGATCATCCACCATGACATTAAGGCATCAAATATTCTTTTGACAGAAGATTTTGAACCTCAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGAGTCATCATTCAATTGGCCCAATAGAAGAAACATTTGGGCATTTGGCACACCAAAATACTATCTTCTTGGCATTGTGGATGAGAAGACAAATGTATTTAATTTGCATTTGGTGTGTTCTTGCTTGA 282 0.383 MLSTRGSVASLLHGSKRRIIHHDIKASNILLTEDFEPQISDFGLAKWLPSQWSHHSIGPIEETFGHLAHQNTIFLALWMRRQMYLICIWCVLA 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181602g00003 93 Gene3D Transferase(Phosphotransferase) domain 1 7 74 - -
Stsc181602g00003 93 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Stsc181602g00003 93 PANTHER OS08G0249100 PROTEIN 13 68 IPR046958 -
Stsc181602g00003 93 SUPERFAMILY Protein kinase-like (PK-like) 12 68 IPR011009 -
Stsc181602g00003 93 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181602g00003 93 Pfam Protein kinase domain 12 52 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181602g00003 Stsc-Chr181602 19419 20061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181602g00003 5 84 Receptor kinase-like Gene Family AT2G48010 42.500 9.97e-13 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc181602g00003 Pkinase 8.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181602g00003 - - aip:107642468 120.168