Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181601g00001 ATGACAGTTGAGAGACGGTTTGTTTTGGTTGGGATTAGAATAGATAGCCATAGTAGACATCTCCTCAACTGGGCACTTGTTAAAGTTGCTGAACCTGGGGATTGTGTTATTGCACTCCACATAGTAAAAAATCCAGATTATGTTTCCAAAAATAAGACTTTGATAGATGGATACTTAGATGTTTATGAAGGACTATGTGATGTGAAGAAGGTAGGACTCACTGGTCAAATCTTGACAGGAAGTTCAATCAGAGACATTCTTGTTAGAGAAGCAAAAAATCATGCTGCTGTAGCTCTTGTGGTAGGAGGTAGAGCTGCCACAGCTAAATATTGTGCCAAACGACTTCCAACCACTACCAATGTTCTAGCCATTCAGGATTCACGAATTGTCTTCAGGAGGTGCACCAATAAAGAACTACCACTATCAGGTGGTTTGTTAGTGGATCCAAGGCCAAGCTTAAGCATAGAAAGCATGAGTGATAGAGTAGTTCAGTCAGAATTTGGTGACTCTGAGGTGGAATCGAAGGAAGAATCGTTAAGCGGATCAGGGAAGTTCAAGACAAGGTCATTATCTATGTTTTCAGGTGATCCTGCTGAGCAGAAGCTAGGATGGCCTCTGCTCCTCAGAGCCAATTCAGAAATCTCACAAAACCTTCATGCAAGGGACATGTCGGTGGTGGAATGGGTGATGAGATTTCCGGATCGTTCGCCCCATGAAACTCCTCACTCTTCTTCCACCGAGGAGGGAAGCCGGTCCGAAAGGGGTATAAGTGATTTCGAGGATGAGAGCTCTAAAACTGGTTCACCTCTATCTTCTCAGCTGCCAAAGGGAATAGAGGGGATGTTTAACCTCAATTCACTCAGTTGCAAGTGGTTCAGCCTTGAGTTTCTGAAGTCTTGCACTAGTCAATTTTCTTCAGAAAACTTGATTGGGAAAGGCGGGTGCAATCGCGTGTACAAAGGAACTCTCCCTGATGGAAAGCCAATCGCAGTTAAAGTTTTGCAGTCATCAAAAGAAGCATGGAAGGAGTTTGCCCTTGAGGTGGAAATAATATCATCATTGGAGCACAGAAACATCACCCCTCTGCTCGGAATTTGCATTGAGGACAGTGACTTAATCTCTGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATTTACATGGAAGGGACAAGGATGGTACCATCTTGTCATGGGAATTAAGATTTAAAATAGCTCTTGGGATAGCTGAAGCCTTGGATTACCTACACAGGGAAACTCTGAAGCCTGTTATACATAGAGATGTCAAGTCCTCAAACATTCTTCTTTCTCATGAGTTTAAACCGCAGTTATCTGATTTTGGGCTTGCAATATGGGGACCAACTNNNNNNNNNNCTACATCTTTTCTGACAGAAGAAGATGTTGTAGGAACATTTGGTTATCTTGCTCCTGAGTACTTCATGTATGGAAAAGTTAGTGACAAGATTGATGTTTATGCCTTTGGTATAGTGCTACTTGAACTCATATCAGGAAGGGAACCTATCAATCCTGAACCTTGCAAAGGACAGGAAAGCTTGGTAGTGTGGGCAAAACCTAAATTAGAGAGAGGGGATATAAAGGGCCTATTGGACCCAAGTTTAGAAGGGAAGTTTGATGAGGCCCAATTACAAAGAATGGTTCTGGCAGCATCTCTATGCATTACAAGGGCTGCAAGGCTTCGTCCTAAAATGAACCAGATACTAAAGATCCTGAAAGGAGATGAGAAAGTTGAAGGTGCCTATAACCTGCAAGGTAATGATAATGATGAAGATAATGATGAACACTCAGAAAATCAGGAAAACATTGATGATGAAGTGTACCCTAGCTCAAGTGCAGAGTTACATCTGAGTCTTGCATTACTTGGAGTTGAGGATGACACTGCATCAACATTTAGCAGTAGTGAACACCCAAAAGAACAATGGAGCAGATCATCAAGTTTTGATTAG 1968 0.4197 MTVERRFVLVGIRIDSHSRHLLNWALVKVAEPGDCVIALHIVKNPDYVSKNKTLIDGYLDVYEGLCDVKKVGLTGQILTGSSIRDILVREAKNHAAVALVVGGRAATAKYCAKRLPTTTNVLAIQDSRIVFRRCTNKELPLSGGLLVDPRPSLSIESMSDRVVQSEFGDSEVESKEESLSGSGKFKTRSLSMFSGDPAEQKLGWPLLLRANSEISQNLHARDMSVVEWVMRFPDRSPHETPHSSSTEEGSRSERGISDFEDESSKTGSPLSSQLPKGIEGMFNLNSLSCKWFSLEFLKSCTSQFSSENLIGKGGCNRVYKGTLPDGKPIAVKVLQSSKEAWKEFALEVEIISSLEHRNITPLLGICIEDSDLISVYDYFPKGSLEENLHGRDKDGTILSWELRFKIALGIAEALDYLHRETLKPVIHRDVKSSNILLSHEFKPQLSDFGLAIWGPTXXXXTSFLTEEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGIVLLELISGREPINPEPCKGQESLVVWAKPKLERGDIKGLLDPSLEGKFDEAQLQRMVLAASLCITRAARLRPKMNQILKILKGDEKVEGAYNLQGNDNDEDNDEHSENQENIDDEVYPSSSAELHLSLALLGVEDDTASTFSSSEHPKEQWSRSSSFD 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181601g00001 655 SMART serkin_6 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181601g00001 655 MobiDBLite consensus disorder prediction 234 261 - -
Stsc181601g00001 655 Pfam Protein kinase domain 305 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181601g00001 655 FunFam Putative receptor-like serine/threonine-protein kinase 379 594 - -
Stsc181601g00001 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Stsc181601g00001 655 MobiDBLite consensus disorder prediction 234 272 - -
Stsc181601g00001 655 MobiDBLite consensus disorder prediction 634 655 - -
Stsc181601g00001 655 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Stsc181601g00001 655 SUPERFAMILY Protein kinase-like (PK-like) 285 578 IPR011009 -
Stsc181601g00001 655 CDD USP_Like 8 104 - -
Stsc181601g00001 655 PANTHER OS08G0249100 PROTEIN 178 607 IPR046958 -
Stsc181601g00001 655 MobiDBLite consensus disorder prediction 587 617 - -
Stsc181601g00001 655 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 273 378 - -
Stsc181601g00001 655 Gene3D Phosphorylase Kinase; domain 1 272 378 - -
Stsc181601g00001 655 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 106 - -
Stsc181601g00001 655 ProSiteProfiles Protein kinase domain profile. 304 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181601g00001 Stsc-Chr181601 1342 4724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181601g00001 292 578 Trihelix Transcription Factor Family AT1G70460 44.178 6.28e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc181601g00001 Pkinase 9.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181601g00001 - - gmx:100789189 939.873