Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181598g00009 ATGGCTTCAAGAAACTTACCTTCAAGTGCAAGCAAGAGGTTCAAGCCCAGTGATGAAGAACTCATACAAGATTTCCTCCTTAACAAGATCAATGGGAGGCCTCTACCGAAGCATGGAACCGTTCTTGAATGCCAATTGTACGGCATTGAGAAGAATCCATGGCAGATCTGGAAAGAAAACATTGGAGACTCGTACGATGGAAAGGACCTTTATTTCTTCACCACACTGAAGAGGAAGTCGTCGAGGAGCAAGCGCATGGTTCGAACCATCGGGTTGGGTTCTTGGGAAGCTGAAGACATCGGTAAAGCAATTCTGTCCACGCAGACTAATAAGCTCATTGGAATGAGGAAGCGTTATCGGTTCGAGAAAAGTCATACTAACCATGATGGTGCATGGATCTTGCATGAATATATCATCGATTCTTCTTTGTTGCCAAATCCTTCCTCTGAGAATAATTATGTTTTATGCAGATTTAGAAAGAATATATACGCTAATAAAAGGAAGAGGGTGGTTCTTGAAACCGAGGCTACTGATGGAGATCAACCTAATGCCAATGATGATGCTGGCATAGGAGGATCTGCTGAACAATCCGAGAATGGAAACGAAAGGATTGAGATTCAGAATGAACCTACAAGCCAATCAGATAATAATGGAGATGAAAAGATGGATGAGATTCAGCAAGAACTAATAACAAACCCATCAGAGAATAATGGAGATGAAAAGATGGATGGGATTCAGCAAGAACTAACAAACCCATCAGAGAATAATGGAGATGAAATAATGGTTAAGGCTGTTGAAACTAATAATGGAATTGAGCAATATTGTGAGGAAGAGGGAGAGGATGACGATGACAATAACCATGACGACGACAATGGTGATGGTAATGACAATGATAATGATGAGTCATGGGCAGAGGCGTTTGCAAGACAATTGATAGAAATCAACAAAGATTGGTTCATACCAAATAATGATGTTCCCATGATTCCTAATACATTTCACCATGACTTGTCTCCAAAAAGATTTAAACAAAATTTGTGA 1038 0.4017 MASRNLPSSASKRFKPSDEELIQDFLLNKINGRPLPKHGTVLECQLYGIEKNPWQIWKENIGDSYDGKDLYFFTTLKRKSSRSKRMVRTIGLGSWEAEDIGKAILSTQTNKLIGMRKRYRFEKSHTNHDGAWILHEYIIDSSLLPNPSSENNYVLCRFRKNIYANKRKRVVLETEATDGDQPNANDDAGIGGSAEQSENGNERIEIQNEPTSQSDNNGDEKMDEIQQELITNPSENNGDEKMDGIQQELTNPSENNGDEIMVKAVETNNGIEQYCEEEGEDDDDNNHDDDNGDGNDNDNDESWAEAFARQLIEINKDWFIPNNDVPMIPNTFHHDLSPKRFKQNL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181598g00009 345 MobiDBLite consensus disorder prediction 190 215 - -
Stsc181598g00009 345 MobiDBLite consensus disorder prediction 274 300 - -
Stsc181598g00009 345 PANTHER NAC TRANSCRIPTION FACTOR 56 13 222 - -
Stsc181598g00009 345 SUPERFAMILY NAC domain 12 159 IPR036093 GO:0003677|GO:0006355
Stsc181598g00009 345 ProSiteProfiles NAC domain profile. 8 161 IPR003441 GO:0003677|GO:0006355
Stsc181598g00009 345 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Stsc181598g00009 345 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
Stsc181598g00009 345 MobiDBLite consensus disorder prediction 173 258 - -
Stsc181598g00009 345 MobiDBLite consensus disorder prediction 274 302 - -
Stsc181598g00009 345 MobiDBLite consensus disorder prediction 227 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181598g00009 Stsc-Chr181598 42943 44243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181598g00009 13 167 NAC Transcription Factor Family AT5G13180 31.847 8.80e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181598g00009 NAM 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181598g00009 - - ahf:112730219 389.423