Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181598g00001 ATGATGCCATCTTCTTCTTCTTCATCTATCCCTGGAAACTACCTAAACAGAGATTCGGGAGCTTATGATTTGGGTGAACTGGATCAAGCTTTTTTTATGTATCTTGATGGTCAGGCTGACCCCTCCACTCTTCATGACCAAAGACCAGAGAACTCATCCTCAGGAATGAGGCCACCAACTCTCAACATTTTCCCTTCTCAGCCTATGAACGTAGACCCCCCGCCATCCAATCCCAAGGCTACAACGGAATTGGCTTCTACACAAACCAATGGTGGTTCTAAGAGACCATCAGAGCCGTCCATGGAATCAGCTAACCCGCGAAATAATGCCGCCTCTGCTCCTGAACCACCCAAACCTATAAAGCGAGAGAACAACCGCAAGGGCACAACTTCAAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTCAGGAGACTTGCCCAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTGAGGAAAAAGGCGTATGTTCAGCAGCTAGAAACAAGTAGGATTAAGCTGAATCAGTTGGAACAAGAGTTACAGAGAGCAAGAGCTCAAGGTATTTTCATGGGTGGAAATCCACTTTTGGGAGGAGAACAAGCCCTTCCTCTTGCTATGACTACTATTACCTCAGAGGCGGCAATGTTCGATATGGAATATGCGAGGTGGTTAGAGGAGCACCACCGCGTAGTGTGCGAACTAAGAGCTGCGGTGCAGGAACACCTTCAGGAGAACGAGCTAAGAATGTACGTAGAAAACTGCTTGGGTCATTATGACCAATTGATTAACCTGAAGAGCCTTGTGGCAAAAACAGACGCATTTCATCTTGTTTTTGGAATGTGGAAGACTCCAACTGAACGCTGTTTCATGTGGATCGGTGGCTTCAGGCCTTCTGAACTCATTAAGGTTATTATGGCTCAAATTGAGCCTCTTACGGAGCAACAAATATTAGGGATATGTGGGTTGCAACAAACAACACGTGAGGCAGAAGAAGCTCTCTCCCAAGGGCTTGAAGCTCTGAACCAATCACTAACAGAAACCATAACATCAGATTCATTGAGTTCTCCTCCAAACATGGTTAATTACATGGGGCAAATGGCTGTGGCCATGAGCAAGCTTTCAACCATCGAAGGTTTCCTTAGGCAGATAATCTTCGGCACCAAACACTGCACCGTCTGCACCAGGTTCTAA 1203 0.4622 MMPSSSSSSIPGNYLNRDSGAYDLGELDQAFFMYLDGQADPSTLHDQRPENSSSGMRPPTLNIFPSQPMNVDPPPSNPKATTELASTQTNGGSKRPSEPSMESANPRNNAASAPEPPKPIKRENNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGIFMGGNPLLGGEQALPLAMTTITSEAAMFDMEYARWLEEHHRVVCELRAAVQEHLQENELRMYVENCLGHYDQLINLKSLVAKTDAFHLVFGMWKTPTERCFMWIGGFRPSELIKVIMAQIEPLTEQQILGICGLQQTTREAEEALSQGLEALNQSLTETITSDSLSSPPNMVNYMGQMAVAMSKLSTIEGFLRQIIFGTKHCTVCTRF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181598g00001 400 MobiDBLite consensus disorder prediction 44 67 - -
Stsc181598g00001 400 MobiDBLite consensus disorder prediction 1 15 - -
Stsc181598g00001 400 SUPERFAMILY Leucine zipper domain 144 186 IPR046347 GO:0003700|GO:0006355
Stsc181598g00001 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 147 162 IPR004827 GO:0003700|GO:0006355
Stsc181598g00001 400 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181598g00001 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 186 IPR004827 GO:0003700|GO:0006355
Stsc181598g00001 400 FunFam BZIP family transcription factor 143 192 - -
Stsc181598g00001 400 Gene3D - 143 192 - -
Stsc181598g00001 400 PANTHER TRANSCRIPTION FACTOR TGA9 95 386 - -
Stsc181598g00001 400 Pfam bZIP transcription factor 144 182 IPR004827 GO:0003700|GO:0006355
Stsc181598g00001 400 Coils Coil 163 190 - -
Stsc181598g00001 400 MobiDBLite consensus disorder prediction 38 147 - -
Stsc181598g00001 400 MobiDBLite consensus disorder prediction 76 110 - -
Stsc181598g00001 400 ProSiteProfiles DOG1 domain profile. 217 400 IPR025422 GO:0006351|GO:0043565
Stsc181598g00001 400 Pfam Seed dormancy control 235 309 IPR025422 GO:0006351|GO:0043565
Stsc181598g00001 400 CDD bZIP_HBP1b-like 144 196 - -
Stsc181598g00001 400 SMART brlzneu 140 206 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181598g00001 Stsc-Chr181598 602 12407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181598g00001 12 386 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 60.506 2.05e-160 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc181598g00001 DOG1 4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181598g00001 K14431 - gmx:100799713 623.624