Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181596g00006 ATGGAAGGCGGCGATCCTTCTTCTTCTTCTTCCCTCTCCGATAACGATGAGGACGAGAACGAACTACCGGACATTCTGTCCCGAGTTCGACTCGTCGACGCTCCCGTGCTATTGTTCGTTTGTTTCCACTACGCTCTTCGCTCTGAACTCAGCCAGCTCCGCCGCTTGGCGGAAACGGCGTCGTTCGGTGATCGGTCGCAGGAACTGAGCAGAGAAGTTATTCTCAAGCTTCAACGGCGGTTCCGGTTTCTTAAAATCGCTCTCAAATATCACTGTGCTGCGGAAGACGAGGTTGTCTTCCTTGCATTGGATACTCACGTGAAAAATGTGGTATCAACATATTCTCTTGAACATAAAAGCACCAATGACCTCTTCGATTCCATCATTCACTTATTCGATGAGCTGATGATGTGCCTTAACGACAATATTGCCAAGCTGTTCCAAGAACTTGTGTACTGCATTGGCGTCCTGCAAACTTCCATCTACCAACATATGCAAAAAGAAGAAGAGCAGGTTTTTCCACTGGTGATACAAAAATTACCTACTGAAGAACAGGCTTCACTTGCGTGGCAATTCATATGTAGTGTTCCTATAATATTGCTGGAGGAACTTTTGCCCTGGATGGTGTCCTTCCTTTCTGAAGACAAACAAGCAGAAGTCACTCAGTGTATAAATGAAATTGCACCAATGGAAAAAGCACTCCAAGAGGTTTTGGTTTCTTGGATTGGAAGCAACAAAAACAAACAAATATTCACTGACGTCTCTTTTAAGGATGAAGTTCAAGGTGGTGTTCAATCCTTAGATATAACAAGATCATTTCCGTTGGGTTCTTCTAATAGGAACTACCAAGAATTTTCAAGTCAGATGGAAGTGAATAATGGCCCAAAAGACAAAGATGGGACCACCCAGGTTAATGTTCTTCATCTTTGGCATGATGCCATCATAAAGGATTTGGAAGAAATTCTGAAAGAACTTTGTTTAATAAAAAACTGCAGCAGCTTTCAGAATTTAGAATCACTGCTTATCCAACTGAAATTCTTTGCAGATGTTATCACCTTCTACAGCAATGCTCAGAAAAAATTAGTACTGAACAGACTAGCTGATGACTGCTTGTCAAAGTCTATCGGACAATTTTGTGATGTAAGTCATATTGAAGATTTACAGCAGCTGTTATTCTACAGATCAGAAAGTGGAATGCCTTTGAGCGAATTTGTAGAGAAGCTTTGTCAAAGACTTGAATCATTCGTATCAAGGCTCAGAAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTGCCATTAGAAAGAATTGTAGCAATGGGATGCAAGAGGGACTTCTGAGCTTGAGCCTGTATATGATGCCACTTGGGTTAGTAAAGGGTGCTATAACATGGTTTTCAGTTCACTTGCCTGAAAAGGAATCCAGATCCATTCTCTACTTCATAAAGAAAGGAAATCATGTTGCCTGTAAAGGCTTTGCATCGCTCTTACAGGAGTGGTTCCGCAATGGGTATTCAGGTAAAACTTCTATTGAAAAATTCCGACAGGACTTGCATCACATGTTCAAAAGCAAATACTCTTTCTTACCTGAGCAAGTTAAGAAAGCACCTGGGTTTTCTTTAAATTCTGACAAGCTGCCTCATAAGGTCTCTAGCAAGATTTGTCTATCCTATCCCTCACCTTCGGGATCCAACAAGTATGAGACACCATATTCCACAGGAATTAATCTGCGTATACTTTTTCCGGCTACAGTCCTTAAGTTGCATCTGCAAGCAAATAGTTCTTCTGCTTCCTTTCTTGAAGATCCAAAACCAATTGACATAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGATTACCTTGTTCTTGGCTCAGCTCAGTTAGAAGACAATCCTAAGATGCTTATGGATTTCCACAAGCGGTTCCACATCATACATTTTCTTTATCAAATCCATAGTGATGCAGAGGATGAAATAGTTTTCCCAGCTTTGGAGGCAAGTGGTAAGCTCAAAAACATTAGCCATGCCTACACCTTTGATCACAAAGTTGAAGTTAAACACTTCAATAAAATATCCCGCATCCTTCATAAGATGTCTGAATTAGATCTTTCAGCTGCTACATCCTTGGTAAGGTATCAGCATTTATGCAGGAAGCTGCAACAAATTTGCAAATCAATGCATAAATCACTTTCATGCCATATTGACCGGGAGGAAGTAGAAATTTGGCCTTTAAGTAGAGAATTCTTCTCAAATAAGGAGCAAGGAAAGATCATAGGATGCATGCTTGGAAGAATAGGAGCACAGATATTGCAAGATATGATACCTTGGCTAATGGCATCGTTAACACAGAAAGAACAGCATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTAATGAGTGGCTAAGTGAATGGTGGGATGGGTACAGTATAACTAAGCCAGCAGAGGGAACAAATAATGCACCTAAACAGACTGTTGAGCCACTGGAGATTATATCCAAATACTTTTCTGAAGAAGTTCTTGATGAATTACAAGAAGAACCCTCTTCCAACACAAGTGATGATTTTCTTCAGAACGATCATATTGGTGATAATGTCCTGCTGTCTAACAACAAATTTGATGGCACAGTTAAGGTTCAAGCTGCAGCGCAGAATAAAAATGAAATTTCAAAATCCACAAATCATTTTCAAGAAAAGGAAGGAATCACATTCACAAATACAATCAACAATGAAGCTCAATCATTTCAATTTCGTCACAAGTCCAGGCATTATGACCGACTTCTGAAAATGAGTCAAGATGATCTGGAGAAGGCAATAAGAAGGGTAACTCGCGATTCCTGCTTAGATCATCAAGAAAAGGCATACATAATACAGAACCTGCTAATAAGCCGTTGGATTATTAGACAGAAGATATCCTTTACAGAAGTTGATGTCAAAAATGATGAGCAGGAAATTCCAGGGAAGCATCCATCCTATAGGGATCCTCTCAATCTAATTTATGGTTGCAAACATTACAAGAGAAACTGTAAGATTTATACACCCTGTTGCAACCAACTTCATTCTTGCATACATTGCCACAATGAGGTATCAGATCATACAACTGACAGGAAATCTATTACAAAAATGATGTGCATGGAGTGCTTGAATATTCAGCCCATTAGTGCCACATGCTCAACTTCTTCCTGCAAGTTAACCATGGCAAAATATTACTGCCGGATCTGCAGATTATTTGAGGATGAAAAGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGAAAGGGCTTGGGTGCAACGTACTTTCATTGCATGAATTGCAATGCATGTATGTCGCGTAGTCTTTTAGTACACACATGCAGGGAAAAACATTTAGAAGATAACTGTCCAATTTGTCATGAATATATCTTCACATCCCTGGCTCCGGTAAAAGCCCTTCCATGTGGTCATGTGATGCACTCGGCATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCTATATGTAGCAAGTCAATTGTAGACATGCAGGACTATTTTAAGAAGTTAGATTCTCTGTTGGCCGAAGAGAAAATGTCTGATGAGCTTTCCAATCGAACTCAGGTTATATTATGCAATGACTGCGAAAAGAAAGGAGTAGCCCCCTTCCACTGGCGTTACCACAAATGTCCTTATTGTGGTTCCTACAACACCAGAGTTCTATGA 3729 0.3988 MEGGDPSSSSSLSDNDEDENELPDILSRVRLVDAPVLLFVCFHYALRSELSQLRRLAETASFGDRSQELSREVILKLQRRFRFLKIALKYHCAAEDEVVFLALDTHVKNVVSTYSLEHKSTNDLFDSIIHLFDELMMCLNDNIAKLFQELVYCIGVLQTSIYQHMQKEEEQVFPLVIQKLPTEEQASLAWQFICSVPIILLEELLPWMVSFLSEDKQAEVTQCINEIAPMEKALQEVLVSWIGSNKNKQIFTDVSFKDEVQGGVQSLDITRSFPLGSSNRNYQEFSSQMEVNNGPKDKDGTTQVNVLHLWHDAIIKDLEEILKELCLIKNCSSFQNLESLLIQLKFFADVITFYSNAQKKLVLNRLADDCLSKSIGQFCDVSHIEDLQQLLFYRSESGMPLSEFVEKLCQRLESFVSRLRKQFAFQENEVFPAIRKNCSNGMQEGLLSLSLYMMPLGLVKGAITWFSVHLPEKESRSILYFIKKGNHVACKGFASLLQEWFRNGYSGKTSIEKFRQDLHHMFKSKYSFLPEQVKKAPGFSLNSDKLPHKVSSKICLSYPSPSGSNKYETPYSTGINLRILFPATVLKLHLQANSSSASFLEDPKPIDIIFFFHKAIKKDLDYLVLGSAQLEDNPKMLMDFHKRFHIIHFLYQIHSDAEDEIVFPALEASGKLKNISHAYTFDHKVEVKHFNKISRILHKMSELDLSAATSLVRYQHLCRKLQQICKSMHKSLSCHIDREEVEIWPLSREFFSNKEQGKIIGCMLGRIGAQILQDMIPWLMASLTQKEQHVLMFLWSMATKNTMFNEWLSEWWDGYSITKPAEGTNNAPKQTVEPLEIISKYFSEEVLDELQEEPSSNTSDDFLQNDHIGDNVLLSNNKFDGTVKVQAAAQNKNEISKSTNHFQEKEGITFTNTINNEAQSFQFRHKSRHYDRLLKMSQDDLEKAIRRVTRDSCLDHQEKAYIIQNLLISRWIIRQKISFTEVDVKNDEQEIPGKHPSYRDPLNLIYGCKHYKRNCKIYTPCCNQLHSCIHCHNEVSDHTTDRKSITKMMCMECLNIQPISATCSTSSCKLTMAKYYCRICRLFEDEKEIYHCPYCNLCRVGKGLGATYFHCMNCNACMSRSLLVHTCREKHLEDNCPICHEYIFTSLAPVKALPCGHVMHSACFQEYTCFNYTCPICSKSIVDMQDYFKKLDSLLAEEKMSDELSNRTQVILCNDCEKKGVAPFHWRYHKCPYCGSYNTRVL 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181596g00006 1242 ProSiteProfiles Zinc finger CHY-type profile. 1001 1070 IPR008913 GO:0008270
Stsc181596g00006 1242 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 649 1242 - -
Stsc181596g00006 1242 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Stsc181596g00006 1242 SMART ring_2 1136 1177 IPR001841 -
Stsc181596g00006 1242 CDD Hr-like 607 745 - -
Stsc181596g00006 1242 SUPERFAMILY RING/U-box 1135 1183 - -
Stsc181596g00006 1242 Gene3D nmb1532 protein domain like 34 194 - -
Stsc181596g00006 1242 Gene3D nmb1532 protein domain like 300 448 - -
Stsc181596g00006 1242 Gene3D nmb1532 protein domain like 601 764 - -
Stsc181596g00006 1242 FunFam Zinc finger protein-related isoform 1 1131 1180 - -
Stsc181596g00006 1242 Pfam Hemerythrin HHE cation binding domain 43 176 IPR012312 -
Stsc181596g00006 1242 SUPERFAMILY Zinc hairpin stack 1073 1127 IPR037275 -
Stsc181596g00006 1242 Pfam Zinc-ribbon 1182 1240 IPR039512 -
Stsc181596g00006 1242 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Stsc181596g00006 1242 Gene3D - 1206 1242 - -
Stsc181596g00006 1242 Pfam Ring finger domain 1134 1177 IPR001841 -
Stsc181596g00006 1242 SUPERFAMILY CHY zinc finger-like 999 1064 IPR037274 GO:0008270
Stsc181596g00006 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Stsc181596g00006 1242 Pfam CHY zinc finger 1008 1082 IPR008913 GO:0008270
Stsc181596g00006 1242 CDD RING-H2_Pirh2-like 1135 1178 - -
Stsc181596g00006 1242 CDD Hr-like 42 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181596g00006 Stsc-Chr181596 38320 47397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181596g00006 34 840 C2H2 Transcription Factor Family AT3G18290 32.399 7.04e-124 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181596g00006 K16276 - gmx:100802706 1815.43