Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181596g00002 ATGATGATGATGCCTTTCAAGATGAGTGAGATGATGACAACAATGGGGTCAACCTTAGCAAGCTTTATGTTTGTTTGGGCAATCATACGCCAGTATTGTCCATATGAAGTTAGAAGGTTCTTTGAGAAGTACACACACAGGATCATGGGGTATTTCTACCCTTACATAAGAATCTCCTTCCATGAATTCTTGGGTGATAGGCTCAAGAGAAGTGAGGCTTATGCTGCTGTTGAGGCATACCTAAGTGCCAACACATCTAAGAGTGCAAAGAGGCTCAAAGCTGAGATGGGAAAAGACAGCACCAACTTGGTTCTCACCATGGATGAGTATGAGAGAGTGACAGATGACTATGAGGGTGCAAAAGTTTGGTGGGTATCTAGCAAGGTTGTGTCAGCAACAAGGTCCATGTCATACTACCCTGAACAAGAGAAGAGGTTCTACAAGCTCAGCTTCCACAAGAAGTATAGGGACTTGATCACAAGTTCTTATTTGGAACATGTTATGAGGGAAGGGAAGGAGATTCGGTTGCGGAATCGGCAGAGGAAGTTGTACACCAATAGCCCTGGATACAAGTGGCCAAGTTACAAGCAAACAATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACCTTTGAGACAATGGCTATGGATTTTGAGAAGAAGAAGGAGATCATTGAGGATTTGGTTACTTTTAGCAAGAGCAAAGATTTCTATGCAAGGATTGGGAAGGCTTGGAAGAGGGGCTACCTCCTTTATGGCCCTCCTGGTACTGGCAAATCCACAATGATTGCGGCCATGGCGAATTTGTTAGGATATGATGTCTATGACTTGGAGCTCACGGCAGTTAAGGACAACACTGAACTGAGGAAGCTCTTGATTGAGACGACGAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCCCTTGATCTTACAGGGCAGAGGAAGAAGAAAGGTGGTGACAAGTTGTCAGATGATGAGGGCGAAAAGGCGAGCTTAGAGCTTAGGAAAGAAGGGAAGGAAGATGGAGGTTGTGGCAGCAGCAAGGTGACGCTTTCCGGGCTATTGAATTTCATTGATGGGATATGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACTACTAACTATGTCGAAAAGCTTGATCCGGCGCTGATCCGAAGGGGAAGGATGGACAAGCACATAGAGTTGTCCTATTGCAGCTTTGATGGATTCAAAGTGCTTGCCAAGAACTACTTGAAGCTTGAAACTCATTCGAAGTTCGACACAATCCGGAAGCTAATTGGGGAGATCAAGATCACTCCGGCCGATGTTGCTGAGAACCTTATGCCTAAGTCTCCACTGGATGATGCAGACAAGTGTCTTTCTTGCTTGATCGATGCGCTTGAGGAAGCTAGTGCTGCTATGAAAGCAGAGGAAATGAAGCAGAGCTGCGCCAGAAAGGAAGATGAGGAACCGAAGCATGCCAATGATCACATTAAGGAAGATGAGGGACTAAAGGACACAAGTCACATTAAGGAAAATGGTGAGGTATGGGAAGACATAGAACCTGTTCAAGCTAAAAAGCAAAGCCTATAG 1584 0.4514 MMMMPFKMSEMMTTMGSTLASFMFVWAIIRQYCPYEVRRFFEKYTHRIMGYFYPYIRISFHEFLGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSTNLVLTMDEYERVTDDYEGAKVWWVSSKVVSATRSMSYYPEQEKRFYKLSFHKKYRDLITSSYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMDFEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGGDKLSDDEGEKASLELRKEGKEDGGCGSSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCSFDGFKVLAKNYLKLETHSKFDTIRKLIGEIKITPADVAENLMPKSPLDDADKCLSCLIDALEEASAAMKAEEMKQSCARKEDEEPKHANDHIKEDEGLKDTSHIKENGEVWEDIEPVQAKKQSL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181596g00002 527 ProSitePatterns AAA-protein family signature. 371 390 IPR003960 GO:0005524|GO:0016887
Stsc181596g00002 527 PANTHER BCS1 AAA-TYPE ATPASE 14 472 - -
Stsc181596g00002 527 Pfam ATPase family associated with various cellular activities (AAA) 250 400 IPR003959 GO:0005524|GO:0016887
Stsc181596g00002 527 CDD RecA-like_BCS1 224 399 - -
Stsc181596g00002 527 MobiDBLite consensus disorder prediction 475 527 - -
Stsc181596g00002 527 Gene3D - 397 460 - -
Stsc181596g00002 527 MobiDBLite consensus disorder prediction 475 519 - -
Stsc181596g00002 527 Pfam Domain associated at C-terminal with AAA 34 126 IPR025753 -
Stsc181596g00002 527 SMART AAA_5 245 403 IPR003593 GO:0016887
Stsc181596g00002 527 FunFam AAA-ATPase ASD, mitochondrial 201 397 - -
Stsc181596g00002 527 Gene3D - 206 396 IPR027417 -
Stsc181596g00002 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181596g00002 Stsc-Chr181596 14520 16529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181596g00002 218 403 Calmodulin-binding Proteins AT3G56690 25.258 6.95e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181596g00002 - - gmx:100798176 815.839