Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181594g00004 ATGGCCAAACCCACCAGAGTTTTCTTCTTCGTGTTCTTCCTTACCTTAACAGAAGGGCAACAGTTATACGTGAACAACGAACAACTAAACTGTGACACCATAACCAACTCAACCTTAGGCAACATCTGCAACTCCATCCCAACCTGCCAATCCTACCTCACTTTCAAATCCTCCACCAATCACAACACACCCTCCAAAATCTCCACCCTCCTCAACACCACTCCCACCCTCATAACAAACTCTAACAACCTCTCAACCGTCTCTGACGTCATCCCAACCGACACCCTCATCACCATCCCCATCACCTGCTCATGCTTCAACAACACATACTACCAGCACAACACCACCTACAACATCTCCGATGACGACACCTACTTCAGCCTCGCCAACAACACCTTCGAGGCACTCACCACGTGTCAAGCTCTCATTGCTCAGAACCCTTCCTTCCCCGAACGGAACCTTCACGGTGGCGAGCTTGTCCACGTGCCTCTCAGGTGCGCATGTCCCACCACGAAACAGCGTGCTGCTGGCTTCAAGTACTTGCTAACTTACTTGGTTTCCATGGGTGAATCCATTTCCTCCATTGCTGAGATCTTCGGGGTTGATACACAGAGCGTTTTGGATGCCAATGAGATTTCTGAAACTTCGGTTGTTTACTACTTCACTCCGATCTCTGTTCCTCTGAAAACAGAGCCGCCAAAAAAGTTGCAGAGGGTGGCGCCGTCGCCGGAGTCTCCGCCACCACCGGGGGAGACTCCGCCAAGCGGTGGCTCAGGAAATTCAAAGAAATGGGTGGTGGTTGGTGTTGTAATTGGGGTTGTGGTTCTGCTTCTTGTTCTGGGCTTTGTTCTGTTTTTCATATGCTTCCGCCGCCGTACACGGCGGCTGCAAACGGCGGAGGCGGCGGCAAAGACGAAGACTTTCTATGACTCTACCAGCACTGAAGAAGTCAAAAAGGGTTCTTTGGATGTTACTACTACAAATAGCAGCTCCACTACTCAATCTTGGTCTATTTCTTCTGAAGGCATACGCTATGCTGTTGAGTCTTTAACAGTTTACAGATTTGAGGAGTTGCAGAAAGCGACCGGGTTCTTCGGCGAGGATAACAGAATCAAGGGGTCTTCTGTTTATAGGGCTTCTTTTAAAGGTGATGATGCTGCTGTGAAGATTCTCAAAGGTGATGTTTCTGCTGAGATCAATATTCTCAAGATGATCAACCACACCAATGTTACAAGATTGTCTGGTTTTTGTGTCCACAAAGGTAACACTTATCTTGTTTATGAGTTTGCTGAGAATGGTGATCTTGATGATTGGCTTCATAATCATGGTAACAAGAAGAAAGATTCTGATTCTGTGGGTTTGAGTTGGAAGCAAAGGGTTAAGGTTGCTCATGATGTTGCTGATGCACTTAACTATCTTCACAACTATACAAACCCTTCTCATGTTCATAAGAATTTGAAGAGTGGTAACATTCTATTGGATGGTAATTTTAGGGCTAAAGTTTCAAACTTTGGGCTTGCAAGAGCGGTTGAGGATGAAGGTGAATATGGGGATGGAGGGTTCCAATTGACAAGGCATGTTGTTGGGACACAAGGTTACATGGCACCTGAATACATTGAGAATGGTGTGATCTCACCAAAGATGGATGTTTTTGCATTTGGGGTTGTGATTTTGGAGCTTCTTTCAGGAAGGGAAGCTGTTGGATTCGGTGAGGATCGCCAAGTCTTGCTGTCATCAACTATAGGGCAAGTTCTTGAAGGAGATAGTGTTAGGGAGAATCTTAGAGATTTCATGGATCCTTCTTTGAAGGGTGTTTACCCTTTGGATTTGGCATATTCTATGGCTGAATTGGCCAAGAAGTGTGTTATCCGTGACATCAATTCAAGACCAAACATCTCTGAGGTTTTCATGACTTTGTCTAAGATTCAATCATCTACATTGGACTGGGATCCTTCAGATGAACTTGAAAGGTCTAAATCAGTTGGCAAAATGTCTGATAGCTGA 2004 0.4561 MAKPTRVFFFVFFLTLTEGQQLYVNNEQLNCDTITNSTLGNICNSIPTCQSYLTFKSSTNHNTPSKISTLLNTTPTLITNSNNLSTVSDVIPTDTLITIPITCSCFNNTYYQHNTTYNISDDDTYFSLANNTFEALTTCQALIAQNPSFPERNLHGGELVHVPLRCACPTTKQRAAGFKYLLTYLVSMGESISSIAEIFGVDTQSVLDANEISETSVVYYFTPISVPLKTEPPKKLQRVAPSPESPPPPGETPPSGGSGNSKKWVVVGVVIGVVVLLLVLGFVLFFICFRRRTRRLQTAEAAAKTKTFYDSTSTEEVKKGSLDVTTTNSSSTTQSWSISSEGIRYAVESLTVYRFEELQKATGFFGEDNRIKGSSVYRASFKGDDAAVKILKGDVSAEINILKMINHTNVTRLSGFCVHKGNTYLVYEFAENGDLDDWLHNHGNKKKDSDSVGLSWKQRVKVAHDVADALNYLHNYTNPSHVHKNLKSGNILLDGNFRAKVSNFGLARAVEDEGEYGDGGFQLTRHVVGTQGYMAPEYIENGVISPKMDVFAFGVVILELLSGREAVGFGEDRQVLLSSTIGQVLEGDSVRENLRDFMDPSLKGVYPLDLAYSMAELAKKCVIRDINSRPNISEVFMTLSKIQSSTLDWDPSDELERSKSVGKMSDS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181594g00004 667 ProSiteProfiles LysM domain profile. 182 226 IPR018392 -
Stsc181594g00004 667 FunFam PTI1-like tyrosine-protein kinase 3 430 653 - -
Stsc181594g00004 667 MobiDBLite consensus disorder prediction 648 667 - -
Stsc181594g00004 667 Gene3D Phosphorylase Kinase; domain 1 324 429 - -
Stsc181594g00004 667 MobiDBLite consensus disorder prediction 239 254 - -
Stsc181594g00004 667 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 652 - -
Stsc181594g00004 667 Pfam LysM domain 184 220 IPR018392 -
Stsc181594g00004 667 SUPERFAMILY Protein kinase-like (PK-like) 333 636 IPR011009 -
Stsc181594g00004 667 Gene3D Transferase(Phosphotransferase) domain 1 430 659 - -
Stsc181594g00004 667 Pfam Protein kinase domain 393 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181594g00004 667 ProSiteProfiles Protein kinase domain profile. 311 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181594g00004 667 MobiDBLite consensus disorder prediction 232 259 - -
Stsc181594g00004 667 MobiDBLite consensus disorder prediction 650 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181594g00004 Stsc-Chr181594 20657 22786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181594g00004 7 662 Receptor kinase-like Gene Family AT2G33580 49.708 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc181594g00004 Pkinase 1.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181594g00004 - - gmx:100818534 785.023