Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181594g00001 ATGGACATGATGAATATTGATGAATCAAACAACAACAACATGCTGAATAATGTGATGAACAAGAGCAACAATAATACTTGTGTCTTCGACATGGCTCATCATCATCATCATGATAACTATAGCAGCCAGCAGCAGAATCAGCAAGAACATGTAGTAGTGAGGGATAAGATCATGGCACATCCTCTCTTCCCTCGTCTCTTGTCTTCTTACCTTAATTGCTTGAAGGTGGGAGCACCAGCAGAAGTGGTGGGAAGGTTAGAGGAATTAAGTTCAAAGTGTGAAACATCATCATCAAGAAGTAGTAGTAATTATTCACCATCATCATCATCATGCATAATAGGTGAAGATCCAGGGCTTGATCAGTTCATGGAGGCATATTGTGAGATGCTAATCAAGTATGAGCAAGAGCTTTCTAAACCCTTCAAAGAAGCCATGCTCTTCTTCTCCACCATTGATTCCCAGCTTAAGGCCCTTTCCCTTTCATCATCATCACCACTTTTTGGTACTCACCAAAATGAATCATCATCATCATTATTACTACAAAATTCGGTGGATATGAACAACAACAACAATAATAATAGCAGCAACATGGAAACAAGTCAAGGGGAAGAAGAGAGGGAACTGAAGATCCAGCTTCTAAAGAAGTACAGTGGATACATTGGTGGACTGAAGAAGGAATTTCTGAAGAAGAAAAAGAATGGGAAGTTACCAAAAGAAGCTCGGCAGCAGCTTCTAGAATGGTGGAACAGACATTACAAATGGCCTTATCCATCGGAATCACAGAAACAAGCACTAGCAGAATCAACGGGGCTAGATCTGAAGCAGATAAACAATTGGTTCATAAATCAGAGAAAACGCCATTGGAAGCCTTCTGAAGACATGCAATTTGCTGTCATGGATGCAACTAACCACTACATGGAAACTATCTTGTGCAAGCCTTTTCCCATGGATACCATGCCTATCCTATTTTAA 972 0.4023 MDMMNIDESNNNNMLNNVMNKSNNNTCVFDMAHHHHHDNYSSQQQNQQEHVVVRDKIMAHPLFPRLLSSYLNCLKVGAPAEVVGRLEELSSKCETSSSRSSSNYSPSSSSCIIGEDPGLDQFMEAYCEMLIKYEQELSKPFKEAMLFFSTIDSQLKALSLSSSSPLFGTHQNESSSSLLLQNSVDMNNNNNNNSSNMETSQGEEERELKIQLLKKYSGYIGGLKKEFLKKKKNGKLPKEARQQLLEWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYMETILCKPFPMDTMPILF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181594g00001 323 SUPERFAMILY Homeodomain-like 229 300 IPR009057 -
Stsc181594g00001 323 Pfam Homeobox KN domain 247 286 IPR008422 GO:0003677|GO:0006355
Stsc181594g00001 323 Gene3D - 225 299 - -
Stsc181594g00001 323 CDD homeodomain 239 291 IPR001356 GO:0003677
Stsc181594g00001 323 Pfam ELK domain 207 228 IPR005539 GO:0003677
Stsc181594g00001 323 ProSiteProfiles ELK domain profile. 207 227 IPR005539 GO:0003677
Stsc181594g00001 323 Pfam KNOX1 domain 53 93 IPR005540 GO:0003677|GO:0005634
Stsc181594g00001 323 SMART KNOX1_2 51 95 IPR005540 GO:0003677|GO:0005634
Stsc181594g00001 323 ProSiteProfiles 'Homeobox' domain profile. 227 290 IPR001356 GO:0003677
Stsc181594g00001 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 297 - -
Stsc181594g00001 323 ProSitePatterns 'Homeobox' domain signature. 265 288 IPR017970 GO:0000981|GO:0006355
Stsc181594g00001 323 SMART KNOX2_2 109 160 IPR005541 GO:0003677|GO:0005634
Stsc181594g00001 323 MobiDBLite consensus disorder prediction 183 199 - -
Stsc181594g00001 323 SMART ELK_2 207 228 IPR005539 GO:0003677
Stsc181594g00001 323 MobiDBLite consensus disorder prediction 183 204 - -
Stsc181594g00001 323 SMART HOX_1 229 294 IPR001356 GO:0003677
Stsc181594g00001 323 Pfam KNOX2 domain 113 158 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181594g00001 Stsc-Chr181594 7176 10140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181594g00001 53 317 Homeobox Transcription Factor Family AT1G62360 61.172 8.59e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc181594g00001 KNOX2 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181594g00001 - - ahf:112702242 430.254