Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181593g00007 ATGGAAACACAAGAGGAACTCACCTTGGGTTCCAAAGACCATACCAACATTGTCAAAGGCAAGAGGACCAAGCGTATTCGTCCCCAGTCTCCTATCCCCTTCTCCATCGCCCCTGCGAATTCAGAAGAAGGGGATACTAATCCTAATCATAATCACAATCCACCGCAATCGCAATTACAACTGCAACCAGAAGAAGAACAAAAAGAAGAATTTACTTACAATAATGCCAATGCCAATAACAACAATACCAGCGTGATGATAATGAATTCCAAGAACATATATGTGGATACCAATAATAATAACACGGCGACACCAACGACTTCTTCGGCCACGGAAGAAGAGGAGGACATGGCGAACTGCCTAATCCTGTTAGCGCAAGGGCAGTCAAGGGAATCTCAAGAAGGCGGAGGAGGAGGGACAACAACAACAAGCTACAACAAGTACAGCAGTAGGAAGTTTCTAGAAGCAGCTGGAGTCGGAGTCGGAGTCGGTTACGGAGGAAGAACAGCAGGAGGAGGAGGATATTATGTCTATGAGTGCAAAACATGTAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGCCACAGAGCTAGCCACAAGAAACCCAAGCCTCCTCCTGCTGCTGCAATCCCCATTCACCATGAAAGAAAGCATCAACAACCACCGCCATTGTTCTCCTCCGACGAAGAAGACTTCCAATTCAAGAATCACAACAAGTCTACCTCAACAAGCTTCCTCCAGTTAAGCACCGCGAGAGGGAATGCGAGTTTGTATAACAAATCGAAGGTTCACGAATGTTCCATTTGCGGAGCTGAATTCACATCTGGACAAGCACTCGGTGGCCATATGAGGCGCCACCGCGCTCCGGTGGGGACAGTGACGGCGGCGACTAACCCTAACACTACTAACACCACGCTTTCGCTGACGACAACGACGGCGGCGGCGGAAGAGGAGCAACCGAAGAAGAAGAGGAATGTGCTGTCTTTGGATTTAGATCTGAATCTTCCTGCACCAGAAGATCATCAAGATCAAAGGGAATCTAAGTTTGGCTTTGCATCCAAGCAACAACAGCAACCACCGCAACCGCAACCACCACCACAACCGCAACCACAAACAAGTCTTGTCTTCTCTACTACCCCAGCTTTGGTGGATTGTCACTACTGA 1167 0.4816 METQEELTLGSKDHTNIVKGKRTKRIRPQSPIPFSIAPANSEEGDTNPNHNHNPPQSQLQLQPEEEQKEEFTYNNANANNNNTSVMIMNSKNIYVDTNNNNTATPTTSSATEEEEDMANCLILLAQGQSRESQEGGGGGTTTTSYNKYSSRKFLEAAGVGVGVGYGGRTAGGGGYYVYECKTCNRTFPSFQALGGHRASHKKPKPPPAAAIPIHHERKHQQPPPLFSSDEEDFQFKNHNKSTSTSFLQLSTARGNASLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTVTAATNPNTTNTTLSLTTTTAAAEEEQPKKKRNVLSLDLDLNLPAPEDHQDQRESKFGFASKQQQQPPQPQPPPQPQPQTSLVFSTTPALVDCHY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181593g00007 388 SMART c2h2final6 265 287 IPR013087 -
Stsc181593g00007 388 SMART c2h2final6 178 200 IPR013087 -
Stsc181593g00007 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Stsc181593g00007 388 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Stsc181593g00007 388 PANTHER ZINC FINGER PROTEIN ZAT5 99 358 - -
Stsc181593g00007 388 MobiDBLite consensus disorder prediction 1 70 - -
Stsc181593g00007 388 MobiDBLite consensus disorder prediction 336 381 - -
Stsc181593g00007 388 MobiDBLite consensus disorder prediction 34 62 - -
Stsc181593g00007 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 287 IPR013087 -
Stsc181593g00007 388 SUPERFAMILY beta-beta-alpha zinc fingers 177 287 IPR036236 -
Stsc181593g00007 388 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
Stsc181593g00007 388 Gene3D Classic Zinc Finger 176 287 - -
Stsc181593g00007 388 Pfam C2H2-type zinc finger 264 290 - -
Stsc181593g00007 388 Pfam C2H2-type zinc finger 177 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181593g00007 Stsc-Chr181593 32738 33904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181593g00007 1 388 C2H2 Transcription Factor Family AT5G04390 41.587 5.88e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181593g00007 zf-C2H2_6 7.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181593g00007 - - lja:Lj5g3v1698890.1 296.975