Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181592g00002 ATGGCGGCAATGATGCAAGGAGTGCAGAAGAACACTCTATATGTAGGTGGTTTAGCAGAGGAAGTTAACGAGTCCATACTTCACGCGGCCTTCATACCCTTTGGGGACATTAAAGATGTTAAGACCCCACTTGACCAGGCAACACAGAAGCACAGGTCATTTGGCTTCATTACGTTCCTTGAGAGGGAGGACGCTGCTGCTGCCATGGACAACATGGATGGTGCTGAGCTCTACGGTCGAGTACTCACTGTTAACTACGCCCTCCCTGAGCGCATCAAGGGTGGTGAGCAGGGCTGGGCCGCTCAACCAATTTGGGCTGATGCTGACACTTGGTTTGAGCGGCAACAACAAGAAGAAGAGATGCGTCGTCTTGAGGCAGAGAATCGAGCTGCAAATCAGGCTGCAGAAGACTTGCGCAGGAAAAAAGCAGCCGAAGAGCGCGAAGGAGAAAAGGAAGACGAAATTGATCCTATGGCAAAGGCCGAAGCAGAGAATCTGCAACAGAATAACACAGAATAA 519 0.5048 MAAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFITFLEREDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRLEAENRAANQAAEDLRRKKAAEEREGEKEDEIDPMAKAEAENLQQNNTE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181592g00002 172 Coils Coil 114 148 - -
Stsc181592g00002 172 PANTHER ATPASE E1 3 171 - -
Stsc181592g00002 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Stsc181592g00002 172 CDD RRM_PPIE 13 87 IPR034168 GO:0003723
Stsc181592g00002 172 MobiDBLite consensus disorder prediction 121 160 - -
Stsc181592g00002 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 82 IPR000504 GO:0003723
Stsc181592g00002 172 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Stsc181592g00002 172 MobiDBLite consensus disorder prediction 121 172 - -
Stsc181592g00002 172 FunFam Peptidyl-prolyl cis-trans isomerase 3 156 - -
Stsc181592g00002 172 SMART rrm1_1 12 85 IPR000504 GO:0003723
Stsc181592g00002 172 Gene3D - 3 154 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181592g00002 Stsc-Chr181592 42667 43975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181592g00002 11 89 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 4.67e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181592g00002 - - ccaj:109797476 260.766