Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181590g00003 ATGCGAGTTTCTCTCTCACACTCGCTCCGTTTAGCTTCTCTCCTCACCAAACAAAAAACGTTTCGACTCCACCACTTCACCACCACCGCCACGCCGGAACACTCCTCCGGTTCCACCCGGGACCGACCCGAACCGCCTCCGATTCGAGTCGGGCTCACAGACTCGGCGGGGCGCGGTGTCTTCGCCACCCGTCCGATCGGTGCCGGAGAACTCATCCACACCGCCAAGCCCGCCGTATGCTACCCTTCTCTCAACGTTCTCGACACTGTGTGTTACTACTGCCTCCGCAGAATCTCTAATTCCAATGGCTCCGAAGCTCAACGCGTGTCGTTTTGCAGCGAAGATTGTAAACGACGCTGCATGGAATTTTACGATGTTGAGACGAAAGCAGATTGGGCGGCCTTTGATGACTATTGCAGGACCCATGATTTGAAATATCCTTTCATGGTGAAGCGGTTGGCTTGCATGGTCATATCAGGAGTTGCCCGCAGTGACAGTCTAGACATACTTCAACCTGCCAATTTGACATCTCAGATGATTTCACGGATGGAAGAAGAGTATGGCTTGTTAAGGAATGCTTTCAGAAAGACTCTTATTTCAGATGAACATGTTGCGTATTACTTATCTAGCAATTTTCAAGTATTAACCAAGCAATGGTACATTGGTGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGCAGGGCTATATGAAGATCTTCTTTCATCAGCGGCGGCATCTGTAGAAGCTGAAGCTGCCGTGGGACATGCTGTCTACATACTACCGTCCTTCTACAATCATGATTGTGATCCAAATGCGCACATTATATGGATAGATAATGCGGATGCAAAATTGAAGGCCCTTCGTGATGTTGACGAAGGTGAAGAACTTAGAATATGCTACATTGATGCCAGCCTGGACCGCGATGCTCGGCAAGAACTTTTGTCTCGGGGTTTTGGTTTTCAATGCAACTGTAACAGGTGCTTACATGGAGATTAA 1011 0.4847 MRVSLSHSLRLASLLTKQKTFRLHHFTTTATPEHSSGSTRDRPEPPPIRVGLTDSAGRGVFATRPIGAGELIHTAKPAVCYPSLNVLDTVCYYCLRRISNSNGSEAQRVSFCSEDCKRRCMEFYDVETKADWAAFDDYCRTHDLKYPFMVKRLACMVISGVARSDSLDILQPANLTSQMISRMEEEYGLLRNAFRKTLISDEHVAYYLSSNFQVLTKQWYIGVLARIRINAFRIELAAGLYEDLLSSAAASVEAEAAVGHAVYILPSFYNHDCDPNAHIIWIDNADAKLKALRDVDEGEELRICYIDASLDRDARQELLSRGFGFQCNCNRCLHGD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181590g00003 336 CDD SET_SMYD 259 332 - -
Stsc181590g00003 336 MobiDBLite consensus disorder prediction 27 50 - -
Stsc181590g00003 336 Gene3D - 90 141 - -
Stsc181590g00003 336 Gene3D SET domain 59 332 IPR046341 -
Stsc181590g00003 336 ProSiteProfiles SET domain profile. 46 306 IPR001214 GO:0005515
Stsc181590g00003 336 Pfam SET domain 57 305 IPR001214 GO:0005515
Stsc181590g00003 336 SUPERFAMILY SET domain 44 332 IPR046341 -
Stsc181590g00003 336 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 44 334 - -
Stsc181590g00003 336 SMART set_7 46 312 IPR001214 GO:0005515
Stsc181590g00003 336 Gene3D - 142 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181590g00003 Stsc-Chr181590 40535 43831 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc181590g00003 SET 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181590g00003 - - qsa:O6P43_009439 433.721