Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181590g00002 ATGAGAGGAAGAAGCTACAGCTACAGTCCATCGCCTCCGAGACGTTACAGCCATAGAAGGCGCAGTCCTAGCCCTAGGGGCCGCTATAGAGGCCGTGGTAGGGATAGGGATTTGCCAACAAGCCTTCTAGTTCGGAACCTCAACAGAGATTGCAGGCCTGAGGATTTACGTGGCCCATTTGGCCAATTCGGTCCCCTCAAGGACGTTTATCTGCCTCGAGATTATTATACTGGGGAGCCGCGTGGATTTGGGTTTGTTCAGTATATGGATCCAGCTGATGCTGCTGATGCAAAGTATCACATGGATGGTCAAATTCTACTTGGTCGGGAACTAACTGTGGTATTTGCCGAGGAAAACAGAAAGAAACCCCAAGAAATGAGAGCTAGAGAACGTCGGAGGTCATATGATTACAGATCTCCACGCGGATATTCTCGCTCTCCACGCTATGCTCGAACCTATTCTCGTAGTCCTGGTTATTCACCCTCTCCAGTTCGAAGGCGTTATTCCAGGTCTATCTCACCCAGATACAAAAGGTATAGGGACCGATCTTATTCCAGGTCACCTTATGGATCAAGAAGCCGCAGTCGAAGCAGGAGCTACAGTAGGAGTTACAGCAGGAGCTACAGTCGAAGCCCTAGCTACTCCAGTGCAGCCACAAGGTGCAGGAAATTGGAAGGGACAGTGAAGAATGTGTTCGCTACCGGAAAAGTGGCAATGATTGTGGTGGATGAATTTGGATCAAGTGGTGGCGGCAGCGGCGGCGGTGTTAATAATAATGGTGGCTCAGAAAAAGGGTGCTTTGTAATGTGGCAAATGGTTCCAGATAAATGGCAGATAGAGCTAGTGTTGAGTGGCCAAAAGGTTGCTGCTGGTAGCAATGGGAGTGTGGCTTGGAGACACACTCCATGGCTTGGTACACATGCTGCTAAAGGTGGTGTTCGTCCTCTCCGGCGAGCTCTTCAGGGATTAGACCCTTTAGCAGTATCTGGTGTATTCAGTGGAGCACAATACATGGGGGAGAAACAAATCCTAAACATGGATTGTTTTGTGTTAAAACTTTCAGCAGATCAAAAGGATCTTGCTGAAAGAAGTGACAACACAGCAGAGATGATCAAACATTCCATTTTTGGTTACTTCAGTCAAAGGAGTGGCCTCTTAGTTCATCTTGAGGACTCATACCTAACAAGAATTCAAGCTCCTGGCTCAAACCCTACATACTGGGAAACAACAATGTCAACAAATATTCAGGATTATAGGCCAGTTCCTGTGGATAATAATGATGATGATAATAATAATGGTGTCATGATTGCACATGCTGGCTCATCAACAGTTATAATCACAAGGTTTGGTGATAACATTAAAGCTGGAACAGACATGACAAGGTTGGAAGAATCATGGAGCATTGATGATGTTGCATTCAATGTTCCAGGTTTGTCCATGGATTGCTTCATACCACCCCAGGAACTTCAGAAGGATTATCCAGAAGAAGGTTTAGATTGGAGATCCCCATTGCATAGATAA 1521 0.4615 MRGRSYSYSPSPPRRYSHRRRSPSPRGRYRGRGRDRDLPTSLLVRNLNRDCRPEDLRGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYMDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERRRSYDYRSPRGYSRSPRYARTYSRSPGYSPSPVRRRYSRSISPRYKRYRDRSYSRSPYGSRSRSRSRSYSRSYSRSYSRSPSYSSAATRCRKLEGTVKNVFATGKVAMIVVDEFGSSGGGSGGGVNNNGGSEKGCFVMWQMVPDKWQIELVLSGQKVAAGSNGSVAWRHTPWLGTHAAKGGVRPLRRALQGLDPLAVSGVFSGAQYMGEKQILNMDCFVLKLSADQKDLAERSDNTAEMIKHSIFGYFSQRSGLLVHLEDSYLTRIQAPGSNPTYWETTMSTNIQDYRPVPVDNNDDDNNNGVMIAHAGSSTVIITRFGDNIKAGTDMTRLEESWSIDDVAFNVPGLSMDCFIPPQELQKDYPEEGLDWRSPLHR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181590g00002 506 MobiDBLite consensus disorder prediction 120 139 - -
Stsc181590g00002 506 Gene3D - 3 132 IPR012677 -
Stsc181590g00002 506 MobiDBLite consensus disorder prediction 120 216 - -
Stsc181590g00002 506 MobiDBLite consensus disorder prediction 188 216 - -
Stsc181590g00002 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 111 IPR000504 GO:0003723
Stsc181590g00002 506 MobiDBLite consensus disorder prediction 1 39 - -
Stsc181590g00002 506 Pfam Protein of unknown function (DUF620) 231 486 IPR006873 -
Stsc181590g00002 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Stsc181590g00002 506 PANTHER LIPASE 217 491 IPR006873 -
Stsc181590g00002 506 SMART rrm1_1 41 114 IPR000504 GO:0003723
Stsc181590g00002 506 SUPERFAMILY RNA-binding domain, RBD 40 145 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181590g00002 Stsc-Chr181590 21226 29303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181590g00002 40 176 Eukaryotic Initiation Factors Gene Family AT2G36660 28.169 1.08e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181590g00002 - - gmx:102666073 444.506