Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181590g00001 ATGTCGGATAACCCTCCTACAACCGAAGTGGACCTTGGTCCTGAGAAGGTTCCTGAGAAGATTGAAGAAGATAATAAAGTTCCAGGTCCCATGCTCCATTGTGGTAATTGTGATACAGAAGTAGTTCACAAGCTGGCTGAAATGTTCCTTCCAGGATTGGCTTGTGCCTGTGTCGATAACACCACGGGATATCCCTTCTCCACGCCTGGTTCAGTGGCAGTTAATTTCAGAAAGGAAATGATAGATTATATCACACAAAGAAGCGAATCGTTCGTTGCTGAGTCTGTTATCTTAGAAGGTGATCCACAAGGTGAAGTATTGGATCATCCGTTCGATATTATTTCTTATTTCGTTGATGAGTTTGTTATTTCGAAGAGGAATCTCGTTAGTCAAGTCTCCGGGTGGGTGCTAAGTGATTGGAGGGAAGACAAAGTAGATGATTTTATCCAGGAGATGGAAATGAATGGATTCTGGTCACTTGATAGAAGAGAAACTATTGCAAAGTCTTTGCTTAAGAATGTTGATTTCAAGAATGCATATCATTGCAATGAGAGTTTCAATTCTCAAGAAGAGCTTGACAATCATATTGATGTTTGCAACTTTAGAACTGCATTCTGTCAAAATGAGGGATGTGATGCCATGTTTTGCACAGCTCATTTCGAGCAGCATGACTCGATTTGTCCTTTCAAGATAATCCCGNNNNNNNNNNAGTGCTCGGATAGCATTATGAGGCGTGATATGGACCGGCACTGCATAACTGTTTGTCCGATGAAGATTGTGAACTGTCCATTTTATGGAGTGGGTTGTAGAGCTGCCGTTGCTCAATGTATGATTGAAAAACATTGCTCGGACGACGTTAAGTCACACTTGATGCACGTGCTTACAGGCATCCACAGGGAAGCAACCGCTGAAGATCTCAGCCGACGAGTGGAGAAAGCTTTGCAGGCATCATCAGGCACCAGATTAGCAGAGGCTCGCGACATGAGAATGTTCAAATCCATTGTCAAGAATCTTGAAGCAAAGCTAGGGCCTATGGAAGTAACTCCCAAGGTGAATCAAGATAGTCAAGCAAGTCACACACAATAA 1086 0.4254 MSDNPPTTEVDLGPEKVPEKIEEDNKVPGPMLHCGNCDTEVVHKLAEMFLPGLACACVDNTTGYPFSTPGSVAVNFRKEMIDYITQRSESFVAESVILEGDPQGEVLDHPFDIISYFVDEFVISKRNLVSQVSGWVLSDWREDKVDDFIQEMEMNGFWSLDRRETIAKSLLKNVDFKNAYHCNESFNSQEELDNHIDVCNFRTAFCQNEGCDAMFCTAHFEQHDSICPFKIIPXXXXCSDSIMRRDMDRHCITVCPMKIVNCPFYGVGCRAAVAQCMIEKHCSDDVKSHLMHVLTGIHREATAEDLSRRVEKALQASSGTRLAEARDMRMFKSIVKNLEAKLGPMEVTPKVNQDSQASHTQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181590g00001 361 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 32 350 - -
Stsc181590g00001 361 ProSiteProfiles Zinc finger TRAF-type profile. 223 270 IPR001293 GO:0008270
Stsc181590g00001 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 288 IPR013083 -
Stsc181590g00001 361 Pfam TRAF-type zinc finger 223 281 IPR001293 GO:0008270
Stsc181590g00001 361 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181590g00001 Stsc-Chr181590 1039 3492 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181590g00001 zf-TRAF 4.4e-07 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181590g00001 - - gmx:100819268 504.982