LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181584g00009	ATGATCAATCCAGAGGTTGAATCTGAAAGTGTGCCTGAAACAGAGGACTCTGTTTCTTTTCATCAAGAGAACATAGGAAGGTTGGGATCAGTGAAAAGACTCAAGAAAATGAGATCAATAAGGCTTCACAGATTGTCAAGCATGAGATCAACCAATAGAAGAGGGAAATCCAAGCATGAGAATCTCTCCATTCTCTCATCTTTTGCCACAGAAAGTTCAGAAATGCCAATAGCCTCAATCCAGATCTCAGATTCATCACCTCATTACATGAAGGGTACAAGTAGCTCTCATGCAAAGGAGAGTTTTCAGATCACACAAACACTATTCACAAAGAAGACTTTGACTGTGAAACTGATGAGGAGTCTGAGCAGAAAGATATCTGGAAGGAATGATGTGAAGAGGAAACTCAAGTCATCAAGATCAATCAAGATTGGAACTCTGAATGGCCAAAAATCAACAAGAAAAGTATCTGAATCCATTTGTGGCATTGATGATATACAACCTTATGATGGTGATAGCAAACCCCAGAGAGTTCTTACAAGAAGATTGAGCTTGAAGCCTGTGAGGATCCTAGCAAAGATGCCTACTTCCAAATCAAGGAAAGCTTCCATGGATAAAGGCCATCATCACATCTCAATGTCTGCAGAATCAAGCTTGCATAGAGCTACATGTTCTTCAACTCTCAAGGATTCCCATTTCTCTGATGACAATGAATTGTCACTTGATGAAAATGGTTCTCAACAAGTATCAGCAGTGAAGGTTTGTCCATACACTTACTGTTCCCTTCACGGTCATCGGCACAAGGATTTGCCTCCATTGAAACGCTTTGTGTCGATGAGGAGGCGTCAGTTGAAGGCCCAAAGGAGCTTGAAAATGGATGGTAGACCTGCTACTAAGTCAAACAAGTCTGGTAATTCAAGGAAAGTTGCTCAGAAAATCGGAATTGGTAACACTGAAAGTGGCATTTCTAATATTCAGAATGTGAAAAGGAAGGTAAAGGACACAAGTAGGGGAGAGGATGAAGAAAATAACTTCAGGTCTGATGTGGTTAAGCCTTCTGCTGCTTCTGATATTGGGATATTGGAGGGAGAAGTAACCACCAAAGGTGAAAACAAAGAAGGAGATAATGAAGTAATGCAGGTGCATTCTTTGCAGAAAGAAGCTGAGCCTGATTTCAGAATGCAGAAAGGCAATGATAGATATATGAAAATGTGGCACTTGGTGTATAAGCATGCCATATTAGGTAATCCAGAGAGGGAAGAAAATGAGAATCAGTTTGATGGAAATGACAAGAGAGGAGGAGAGAAAGGAGCTCAATCATTTGATGGAGTAAACAGTTCTTCCATTCAGGATCAGTGTGAAATGGACCAGGCTACATATGATGAAAATAAGAGTGTGATTGACTTGGTCCAGAAAGCATTTGATGAAATTCTTCTTCCGGAAACAGAAGACCTCGCTTCTGATGATGGTTCTAAATCTAGAGGCTCTGGCTCTGATGAGGAACTCTCAGAAAAGAATGAAGATAAAACTGGGGAAGGGAGTGTCTCAGTATCTGAAGAATCTCCTAAAGAAGATACATTGCCAGAAGATGAAAACTTGAGAAGTCAAGCAGAGGAGATAACAGGACAAAGAATGGGATCGAAGCCGGACCAGAAAACACCGAAGAACTGGAGCAATCTGAAGAAGATAATCCTGTTGAGAAGGTTTGTGAAGGCACTGGACAAGGTGAGGAAGTTGAATTTTAGGCGACCAAGACATTTGCCATTAGGTTCTGAGTTTGAAGCAGAAAGAGTTTTTCTCAAGCGCCAAACAGCTGAAGAGAAACGAAGTGCTGATGAATGGATGCTTGATTATGCACTTCAGAATGTCATTTCCAAACTAGCACCAGCTCAAAGGCAAAGAGTTTCACTTCTTGTAGAAGCTTTCGAAACAATTCTTCCATTTCAAGATTCTCAAAAAGCCTCATTGTCTTCTGCAACAATTGAGACTCGAGCCAAGCCTGTTCAGTCAATTGATGACTCCTCTGATCACAGCAGGGAAGAAATAGAAAAAGATAATTCTTGTTATAATACAATGCCTGAAATGCACAATTCTGCTGTGCTTAAAGAAAGATGTCTTGACAATCTTGGGACCAAGGCAGTTGAGAATATGCCTGAATCTGGAGCTGTTGAAGAAAAACCAAATGCCACACACAGTTTATTCAGAAGTTATGATAATGGGGTGAAGGAATTAACTGGAGATGATAATATTCATCATGTGGAGGCTCCATTCAATGAGGTAGTCAGTGAAGTTCCAGAAGACTCAATGCTGGAACAATCCAAAAGTTTTATACTAAAAGGTCTTGCCAGATCACTCGGAACTAATTTGGTTGGTTCAGAACTTTCAGACCAATTAGACAAACCGAAAGCAGACATAGAAGAAAGGACAGAGAAAGCTAATACCCGTATGCATGAGCAATCTGAAGATCCTAATAACTCAGGACTATGGTTCTTGGTGTATAAGCACATGGTATCTGGTTCAGCAGAAAATGATTCCAAGTCAGTAATTGATGGGGCAGATGGGAAAGAATCTGAGTATGAAAAGTCAAGAAACACCTCAGTTTCATATGAAAGTACACCAATGATGAATCAAGATATGGACATCAAGGATCATGGTGAAGCTGACAGAGAAGTTGAACGCCAACAGCTTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATTCAATTGATTTAGATGATGACTCCAAACTATCCAATGGTGCTGAAAGAGTGTTCTGTAAAGACAACCAAAAGGAACCAAGGATGGTATCTGGAAATGGAATAACTGAAAAACGCGAAAAGGAAGATCAAACAGAATCCAAGGAAGGAAACAACCCAGACAGGAAATTACCCAGAAGCTGGAGCAATCTTAAAAAGGTGATCCTGCTTAGGAGATTCATCAAGTCATTGGAAAAAGTGAGAAAATTCAACCCAAGAGGGCCTAGATATTTGCCAATAGAGCCTGATCCAGAAGCTGAAAAGGTTAACTTAAGGCATCAAGACATAGCAGGAAGGAAAGGCACAGAAGAATGGATGCTTGATTATGCGCTTCGACAGGTTGTTTCGGAACTTACCCCAGCTCGGAAAAGAAAGGTGGGGCTGCTAGTGGAAGCTTTTGAAACAGTCATGCCAACCATGAAAAACTGA	3186	0.4068	MINPEVESESVPETEDSVSFHQENIGRLGSVKRLKKMRSIRLHRLSSMRSTNRRGKSKHENLSILSSFATESSEMPIASIQISDSSPHYMKGTSSSHAKESFQITQTLFTKKTLTVKLMRSLSRKISGRNDVKRKLKSSRSIKIGTLNGQKSTRKVSESICGIDDIQPYDGDSKPQRVLTRRLSLKPVRILAKMPTSKSRKASMDKGHHHISMSAESSLHRATCSSTLKDSHFSDDNELSLDENGSQQVSAVKVCPYTYCSLHGHRHKDLPPLKRFVSMRRRQLKAQRSLKMDGRPATKSNKSGNSRKVAQKIGIGNTESGISNIQNVKRKVKDTSRGEDEENNFRSDVVKPSAASDIGILEGEVTTKGENKEGDNEVMQVHSLQKEAEPDFRMQKGNDRYMKMWHLVYKHAILGNPEREENENQFDGNDKRGGEKGAQSFDGVNSSSIQDQCEMDQATYDENKSVIDLVQKAFDEILLPETEDLASDDGSKSRGSGSDEELSEKNEDKTGEGSVSVSEESPKEDTLPEDENLRSQAEEITGQRMGSKPDQKTPKNWSNLKKIILLRRFVKALDKVRKLNFRRPRHLPLGSEFEAERVFLKRQTAEEKRSADEWMLDYALQNVISKLAPAQRQRVSLLVEAFETILPFQDSQKASLSSATIETRAKPVQSIDDSSDHSREEIEKDNSCYNTMPEMHNSAVLKERCLDNLGTKAVENMPESGAVEEKPNATHSLFRSYDNGVKELTGDDNIHHVEAPFNEVVSEVPEDSMLEQSKSFILKGLARSLGTNLVGSELSDQLDKPKADIEERTEKANTRMHEQSEDPNNSGLWFLVYKHMVSGSAENDSKSVIDGADGKESEYEKSRNTSVSYESTPMMNQDMDIKDHGEADREVERQQLEAIKMVEEAIDSIDLDDDSKLSNGAERVFCKDNQKEPRMVSGNGITEKREKEDQTESKEGNNPDRKLPRSWSNLKKVILLRRFIKSLEKVRKFNPRGPRYLPIEPDPEAEKVNLRHQDIAGRKGTEEWMLDYALRQVVSELTPARKRKVGLLVEAFETVMPTMKN	1061

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	848	863	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	938	964	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	287	346	-	-
	Stsc181584g00009	1061	SMART	CaM_binding_2	943	1057	IPR012417	GO:0005516
	Stsc181584g00009	1061	SMART	CaM_binding_2	533	647	IPR012417	GO:0005516
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	416	437	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	485	537	-	-
	Stsc181584g00009	1061	Pfam	Plant calmodulin-binding domain	547	647	IPR012417	GO:0005516
	Stsc181584g00009	1061	Pfam	Plant calmodulin-binding domain	952	1057	IPR012417	GO:0005516
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	481	555	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	1	24	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	928	964	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	842	870	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	294	329	-	-
	Stsc181584g00009	1061	Coils	Coil	802	822	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	538	555	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	416	448	-	-
	Stsc181584g00009	1061	MobiDBLite	consensus disorder prediction	330	346	-	-
	Stsc181584g00009	1061	PANTHER	CALMODULIN-BINDING PROTEIN-RELATED	334	647	IPR044681	GO:0005516

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181584g00009	Stsc-Chr181584	48003	51866	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181584g00009	380	670	Calmodulin-binding Proteins	AT5G04020	31.908	1.33e-22	103

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181584g00009	-		-	aip:107645531	1646.71